BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00039206
         (337 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI35295.3| unnamed protein product [Vitis vinifera]              140   1e-31
ref|XP_002271266.1| PREDICTED: pentatricopeptide repeat-containi...   140   1e-31
emb|CAN61464.1| hypothetical protein VITISV_005683 [Vitis vinifera]   140   1e-31
ref|XP_002331135.1| predicted protein [Populus trichocarpa] gi|2...   136   2e-30
ref|XP_002526448.1| pentatricopeptide repeat-containing protein,...   132   2e-29

>emb|CBI35295.3| unnamed protein product [Vitis vinifera]
          Length = 645

 Score =  140 bits (353), Expect = 1e-31
 Identities = 65/112 (58%), Positives = 86/112 (76%)
 Frame = +2

Query: 2   SKSLNDGKIIHRHLIKNNTYITRSVILEKLTYMFLACNEVDLARNVFDQVPRRNIILWNS 181
           SKSL + K IH+H +KN +    SV L KLT ++L+CN+V LAR +FD++P  ++ILWN 
Sbjct: 21  SKSLTEAKKIHQHFLKNTSNADSSV-LHKLTRLYLSCNQVVLARRLFDEIPNPSVILWNQ 79

Query: 182 MIRAYAWKGPFDEAIEFYYKMIDLGITPNKFTFPFVLKACSGLKALEIGKEI 337
           +IRAYAW GPFD AI+ Y+ M+ LG+ PNK+T+PFVLKACSGL A+E G EI
Sbjct: 80  IIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLLAIEDGVEI 131



 Score = 61.2 bits (147), Expect = 8e-08
 Identities = 32/99 (32%), Positives = 55/99 (55%)
 Frame = +2

Query: 8   SLNDGKIIHRHLIKNNTYITRSVILEKLTYMFLACNEVDLARNVFDQVPRRNIILWNSMI 187
           +L  G   H +LI    + T ++I   L  M+  C ++  AR VF+++ R +I+ WN+MI
Sbjct: 288 ALQHGFCSHGYLIVRG-FATDTLICNALIDMYSKCGKISFAREVFNRMDRHDIVSWNAMI 346

Query: 188 RAYAWKGPFDEAIEFYYKMIDLGITPNKFTFPFVLKACS 304
             Y   G   EA+  ++ ++ LG+ P+  TF  +L +CS
Sbjct: 347 IGYGIHGLGMEALGLFHDLLALGLKPDDITFICLLSSCS 385


>ref|XP_002271266.1| PREDICTED: pentatricopeptide repeat-containing protein At3g16610
           [Vitis vinifera]
          Length = 785

 Score =  140 bits (353), Expect = 1e-31
 Identities = 65/112 (58%), Positives = 86/112 (76%)
 Frame = +2

Query: 2   SKSLNDGKIIHRHLIKNNTYITRSVILEKLTYMFLACNEVDLARNVFDQVPRRNIILWNS 181
           SKSL + K IH+H +KN +    SV L KLT ++L+CN+V LAR +FD++P  ++ILWN 
Sbjct: 21  SKSLTEAKKIHQHFLKNTSNADSSV-LHKLTRLYLSCNQVVLARRLFDEIPNPSVILWNQ 79

Query: 182 MIRAYAWKGPFDEAIEFYYKMIDLGITPNKFTFPFVLKACSGLKALEIGKEI 337
           +IRAYAW GPFD AI+ Y+ M+ LG+ PNK+T+PFVLKACSGL A+E G EI
Sbjct: 80  IIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLLAIEDGVEI 131



 Score = 61.2 bits (147), Expect = 8e-08
 Identities = 32/99 (32%), Positives = 55/99 (55%)
 Frame = +2

Query: 8   SLNDGKIIHRHLIKNNTYITRSVILEKLTYMFLACNEVDLARNVFDQVPRRNIILWNSMI 187
           +L  G   H +LI    + T ++I   L  M+  C ++  AR VF+++ R +I+ WN+MI
Sbjct: 428 ALQHGFCSHGYLIVRG-FATDTLICNALIDMYSKCGKISFAREVFNRMDRHDIVSWNAMI 486

Query: 188 RAYAWKGPFDEAIEFYYKMIDLGITPNKFTFPFVLKACS 304
             Y   G   EA+  ++ ++ LG+ P+  TF  +L +CS
Sbjct: 487 IGYGIHGLGMEALGLFHDLLALGLKPDDITFICLLSSCS 525


>emb|CAN61464.1| hypothetical protein VITISV_005683 [Vitis vinifera]
          Length = 785

 Score =  140 bits (353), Expect = 1e-31
 Identities = 65/112 (58%), Positives = 86/112 (76%)
 Frame = +2

Query: 2   SKSLNDGKIIHRHLIKNNTYITRSVILEKLTYMFLACNEVDLARNVFDQVPRRNIILWNS 181
           SKSL + K IH+H +KN +    SV L KLT ++L+CN+V LAR +FD++P  ++ILWN 
Sbjct: 21  SKSLTEAKKIHQHFLKNTSNADSSV-LHKLTRLYLSCNQVVLARRLFDEIPNPSVILWNQ 79

Query: 182 MIRAYAWKGPFDEAIEFYYKMIDLGITPNKFTFPFVLKACSGLKALEIGKEI 337
           +IRAYAW GPFD AI+ Y+ M+ LG+ PNK+T+PFVLKACSGL A+E G EI
Sbjct: 80  IIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLLAIEDGVEI 131



 Score = 61.2 bits (147), Expect = 8e-08
 Identities = 32/99 (32%), Positives = 55/99 (55%)
 Frame = +2

Query: 8   SLNDGKIIHRHLIKNNTYITRSVILEKLTYMFLACNEVDLARNVFDQVPRRNIILWNSMI 187
           +L  G   H +LI    + T ++I   L  M+  C ++  AR VF+++ R +I+ WN+MI
Sbjct: 428 ALQHGFCSHGYLIVRG-FATDTLICNALIDMYSKCGKISFAREVFNRMDRHDIVSWNAMI 486

Query: 188 RAYAWKGPFDEAIEFYYKMIDLGITPNKFTFPFVLKACS 304
             Y   G   EA+  ++ ++ LG+ P+  TF  +L +CS
Sbjct: 487 IGYGIHGLGMEALGLFHDLLALGLKPDDITFICLLSSCS 525


>ref|XP_002331135.1| predicted protein [Populus trichocarpa] gi|222872863|gb|EEF09994.1|
           predicted protein [Populus trichocarpa]
          Length = 799

 Score =  136 bits (343), Expect = 2e-30
 Identities = 67/120 (55%), Positives = 90/120 (75%), Gaps = 8/120 (6%)
 Frame = +2

Query: 2   SKSLNDGKIIHRHLIK-----NNTYITR-SVILEKLTYMFLACNEVDLARNVFDQVPRR- 160
           SKSL  GK+IH+HL+K     + T +T   V  EKL  +++AC+E+ +AR+VFD++P R 
Sbjct: 22  SKSLFRGKLIHQHLLKCLHRTHETNLTNFDVPFEKLVDLYIACSELKIARHVFDKMPHRP 81

Query: 161 -NIILWNSMIRAYAWKGPFDEAIEFYYKMIDLGITPNKFTFPFVLKACSGLKALEIGKEI 337
            N++LWN +IRAYAW GP++EAI+ YYKM+  GITPN+FTFPFVLKACS LK    G+EI
Sbjct: 82  KNVVLWNLLIRAYAWNGPYEEAIDLYYKMLGYGITPNRFTFPFVLKACSALKEASEGREI 141



 Score = 58.2 bits (139), Expect = 7e-07
 Identities = 31/87 (35%), Positives = 48/87 (55%)
 Frame = +2

Query: 71  SVILEKLTYMFLACNEVDLARNVFDQVPRRNIILWNSMIRAYAWKGPFDEAIEFYYKMID 250
           ++I   L  M+  C ++D AR VFD++ +R I+ WN+MI AY   G   EA+  +  M  
Sbjct: 461 TMICNALIDMYAKCGKIDTARKVFDRMHKRGIVSWNTMIIAYGIHGIGLEALLLFDNMQS 520

Query: 251 LGITPNKFTFPFVLKACSGLKALEIGK 331
            G+ P+  TF  ++ ACS    +  GK
Sbjct: 521 EGLKPDDVTFICLISACSHSGLVAEGK 547



 Score = 55.8 bits (133), Expect = 3e-06
 Identities = 34/116 (29%), Positives = 65/116 (56%), Gaps = 5/116 (4%)
 Frame = +2

Query: 5   KSLNDGKIIH----RHLIKNNTYITRSVILEKLTYMFLACNEVDLARNVFDQVPRRNIIL 172
           K  ++G+ IH    R  +++N Y++ +++       +  C  +D A+ VFD++ +R+++ 
Sbjct: 133 KEASEGREIHCDIKRLRLESNVYVSTALV-----DFYAKCGCLDDAKEVFDKMHKRDVVA 187

Query: 173 WNSMIRAYA-WKGPFDEAIEFYYKMIDLGITPNKFTFPFVLKACSGLKALEIGKEI 337
           WNSMI  ++  +G +DE      +M +  ++PN  T   VL A + + +L  GKEI
Sbjct: 188 WNSMISGFSLHEGSYDEVARLLVQMQN-DVSPNSSTIVGVLPAVAQVNSLRHGKEI 242


>ref|XP_002526448.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223534228|gb|EEF35943.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 557

 Score =  132 bits (333), Expect = 2e-29
 Identities = 63/120 (52%), Positives = 91/120 (75%), Gaps = 8/120 (6%)
 Frame = +2

Query: 2   SKSLNDGKIIHRHLIK------NNTYITRSVILEKLTYMFLACNEVDLARNVFDQVPRR- 160
           SK L+ GK+IH++L+K      N+T+    +++EKL +++L CNE   AR++FD+ P+R 
Sbjct: 23  SKWLSQGKLIHQNLLKHHIAKNNDTHFR--LVIEKLMHLYLVCNEDQYARHLFDKSPQRP 80

Query: 161 -NIILWNSMIRAYAWKGPFDEAIEFYYKMIDLGITPNKFTFPFVLKACSGLKALEIGKEI 337
             +++WN +IRAYAW GPF EAI  YYKM++LGI P+K+T+PFVLKACS L+A+E GKEI
Sbjct: 81  RKVVIWNMLIRAYAWNGPFTEAINLYYKMLELGIQPSKYTYPFVLKACSALQAIEEGKEI 140



 Score = 63.2 bits (152), Expect = 2e-08
 Identities = 38/100 (38%), Positives = 55/100 (55%), Gaps = 1/100 (1%)
 Frame = +2

Query: 8   SLNDGKIIHRH-LIKNNTYITRSVILEKLTYMFLACNEVDLARNVFDQVPRRNIILWNSM 184
           +L  G   H + LIK  T  +   I   L  M+  C  +D ARNVFD++ +R+I+ WN+M
Sbjct: 442 ALQHGSCCHSYALIKGFT--SEITICNALIDMYAKCGRIDTARNVFDRMHKRDIVSWNAM 499

Query: 185 IRAYAWKGPFDEAIEFYYKMIDLGITPNKFTFPFVLKACS 304
           I AY   G   EA+  +  M+  G+ P+  TF  +L ACS
Sbjct: 500 IIAYGNHGLGMEALLLFDNMLADGLEPDDVTFICLLSACS 539