BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00038950
         (338 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003537521.1| PREDICTED: pentatricopeptide repeat-containi...   162   2e-38
ref|XP_002278647.1| PREDICTED: pentatricopeptide repeat-containi...   161   4e-38
ref|XP_002298671.1| predicted protein [Populus trichocarpa] gi|2...   156   1e-36
ref|XP_003601696.1| Pentatricopeptide repeat-containing protein ...   155   4e-36
ref|XP_004156841.1| PREDICTED: LOW QUALITY PROTEIN: pentatricope...   150   8e-35

>ref|XP_003537521.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14050,
           mitochondrial-like [Glycine max]
          Length = 611

 Score =  162 bits (411), Expect = 2e-38
 Identities = 78/112 (69%), Positives = 93/112 (83%)
 Frame = +1

Query: 1   LLSNTYAAAGMWDDVSKVRKLMAVMEVRIEPGYSCVNLGKDGQVFYAGEIPYHIKDEILG 180
           LLSN YA AGMW+DVSKVRKLM  +E +  PGYSC++LGK   VFYAGE  + ++DEI+G
Sbjct: 447 LLSNIYAGAGMWEDVSKVRKLMMTLEAKKAPGYSCIDLGKGSHVFYAGETSHPMRDEIIG 506

Query: 181 LLQELSLEMKKRGYVPDTSFVLHDMGKQEKEQQLNFHSERLAVAYGLLKAVP 336
           L++EL  EM+KRGY PDTS VLHDM +QEKE+QL +HSERLAVAYGLLKAVP
Sbjct: 507 LMRELDEEMRKRGYAPDTSSVLHDMDQQEKERQLFWHSERLAVAYGLLKAVP 558


>ref|XP_002278647.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14050,
           mitochondrial-like [Vitis vinifera]
          Length = 610

 Score =  161 bits (408), Expect = 4e-38
 Identities = 78/112 (69%), Positives = 93/112 (83%)
 Frame = +1

Query: 1   LLSNTYAAAGMWDDVSKVRKLMAVMEVRIEPGYSCVNLGKDGQVFYAGEIPYHIKDEILG 180
           LLSN YA+A MW+ VSKVR+LMA MEV+ EPGYSC+ LGK+ QVF AGE  +  K+EI G
Sbjct: 446 LLSNIYASAAMWESVSKVRRLMAAMEVKKEPGYSCIVLGKESQVFLAGETSHPAKEEIFG 505

Query: 181 LLQELSLEMKKRGYVPDTSFVLHDMGKQEKEQQLNFHSERLAVAYGLLKAVP 336
           LL+EL  EMKKRGY+PDTS VLHD+ +QEKE+QL +HSERLAVAYGLLK +P
Sbjct: 506 LLEELDAEMKKRGYIPDTSSVLHDLEQQEKERQLFWHSERLAVAYGLLKGIP 557


>ref|XP_002298671.1| predicted protein [Populus trichocarpa] gi|222845929|gb|EEE83476.1|
           predicted protein [Populus trichocarpa]
          Length = 609

 Score =  156 bits (395), Expect = 1e-36
 Identities = 75/112 (66%), Positives = 94/112 (83%)
 Frame = +1

Query: 1   LLSNTYAAAGMWDDVSKVRKLMAVMEVRIEPGYSCVNLGKDGQVFYAGEIPYHIKDEILG 180
           LLSN YA AG W+ +S+VRKLM  MEV+ +PGYS ++LGK+ QVF+AGE  + +KDEI G
Sbjct: 445 LLSNVYAGAGKWEQMSRVRKLMTDMEVKRKPGYSSIDLGKESQVFHAGETCHPMKDEIFG 504

Query: 181 LLQELSLEMKKRGYVPDTSFVLHDMGKQEKEQQLNFHSERLAVAYGLLKAVP 336
           LL+EL  EM+KRGY+PDTS+VLHDM +QEKE++L +HSER AVAYGLLKAVP
Sbjct: 505 LLKELDAEMRKRGYIPDTSYVLHDMEEQEKERELFWHSERWAVAYGLLKAVP 556


>ref|XP_003601696.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355490744|gb|AES71947.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 616

 Score =  155 bits (391), Expect = 4e-36
 Identities = 78/112 (69%), Positives = 94/112 (83%)
 Frame = +1

Query: 1   LLSNTYAAAGMWDDVSKVRKLMAVMEVRIEPGYSCVNLGKDGQVFYAGEIPYHIKDEILG 180
           LLSN YA AGMW++VS VRKLMAV EV+  PGYSCV+LG++ QVF+AGE    +KDEILG
Sbjct: 452 LLSNIYAGAGMWENVSMVRKLMAVKEVKKVPGYSCVDLGREFQVFHAGEASQPMKDEILG 511

Query: 181 LLQELSLEMKKRGYVPDTSFVLHDMGKQEKEQQLNFHSERLAVAYGLLKAVP 336
           L+ +L  EM++RGYVPDTS VL DM +QEKE+QL +HSERLA+AYGLLKAVP
Sbjct: 512 LMTKLDSEMRRRGYVPDTSSVLLDMDQQEKERQLFWHSERLALAYGLLKAVP 563


>ref|XP_004156841.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g14050, mitochondrial-like [Cucumis sativus]
          Length = 611

 Score =  150 bits (380), Expect = 8e-35
 Identities = 78/113 (69%), Positives = 93/113 (82%), Gaps = 1/113 (0%)
 Frame = +1

Query: 1   LLSNTYAAAGMWDDVSKVRKLMAVMEVRIEPGYSCVNLGKDGQVFYAGEIPYH-IKDEIL 177
           LLSN YA A MW  VSKVRKLM+ MEVR EPGYS ++ GKD QVF+AGE   H +K+EI 
Sbjct: 446 LLSNVYAGAEMWGSVSKVRKLMSSMEVRKEPGYSSIDFGKDSQVFHAGESCDHPMKNEIC 505

Query: 178 GLLQELSLEMKKRGYVPDTSFVLHDMGKQEKEQQLNFHSERLAVAYGLLKAVP 336
            LL++L  EM+KRGYVP+TSFVL+D+ +QEKE+QL +HSERLAVAYGLLKAVP
Sbjct: 506 NLLKDLDAEMRKRGYVPNTSFVLYDIEQQEKEKQLFWHSERLAVAYGLLKAVP 558