BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00038931
         (506 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002266563.1| PREDICTED: pentatricopeptide repeat-containi...   233   9e-60
ref|XP_002515001.1| pentatricopeptide repeat-containing protein,...   221   6e-56
ref|XP_004159705.1| PREDICTED: pentatricopeptide repeat-containi...   218   3e-55
ref|XP_004135302.1| PREDICTED: pentatricopeptide repeat-containi...   218   3e-55
ref|XP_003548528.1| PREDICTED: pentatricopeptide repeat-containi...   213   1e-53

>ref|XP_002266563.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04130,
           mitochondrial [Vitis vinifera]
          Length = 496

 Score =  233 bits (595), Expect = 9e-60
 Identities = 112/168 (66%), Positives = 136/168 (80%)
 Frame = -2

Query: 505 YCNQFNFRKVYELLDEMRAQGCSPNVVTYTTLMYSLAKCDEYEEALQVYERMKSDKCKPD 326
           YC Q NFRKVYELLD+M+AQGC+PNVVTYTT+M SL K +++EEALQ+ ERM+S  CKPD
Sbjct: 260 YCRQSNFRKVYELLDDMQAQGCAPNVVTYTTIMCSLTKVEQFEEALQIAERMRSVGCKPD 319

Query: 325 TLFYNVLIHVLGRAGRLCEAAHIFEVEMPMSGIIPSTSTYNTMIAMYCHHSQEQSALFVL 146
           TLFYN LIH LGRAG+L EA  +FEVEMP +G+ P+TSTYN+MIAM+CHHSQEQ AL +L
Sbjct: 320 TLFYNALIHTLGRAGQLREAVRVFEVEMPKTGVPPNTSTYNSMIAMFCHHSQEQKALNLL 379

Query: 145 QEMEKSTLCKPDLKTYNPLLKLCLRTGKIXXXXXXXXXDMLKKHHLSL 2
           +E+E ST CKPD++TY P+LK C +TGKI         DM+ KHHLSL
Sbjct: 380 REIENSTFCKPDIQTYYPVLKSCFKTGKI-DSLSNFLDDMVNKHHLSL 426



 Score = 57.8 bits (138), Expect = 9e-07
 Identities = 34/127 (26%), Positives = 58/127 (45%)
 Frame = -2

Query: 439 SPNVVTYTTLMYSLAKCDEYEEALQVYERMKSDKCKPDTLFYNVLIHVLGRAGRLCEAAH 260
           SPN  T+   ++   K +  +EA    + MK   C+P  + Y+ +I    R     +   
Sbjct: 212 SPNTHTFNIFIHGWCKANRVDEAEWTIQEMKGHGCRPCVISYSTIIQSYCRQSNFRKVYE 271

Query: 259 IFEVEMPMSGIIPSTSTYNTMIAMYCHHSQEQSALFVLQEMEKSTLCKPDLKTYNPLLKL 80
           + + +M   G  P+  TY T++       Q + AL + + M +S  CKPD   YN L+  
Sbjct: 272 LLD-DMQAQGCAPNVVTYTTIMCSLTKVEQFEEALQIAERM-RSVGCKPDTLFYNALIHT 329

Query: 79  CLRTGKI 59
             R G++
Sbjct: 330 LGRAGQL 336


>ref|XP_002515001.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223546052|gb|EEF47555.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 466

 Score =  221 bits (562), Expect = 6e-56
 Identities = 108/168 (64%), Positives = 131/168 (77%)
 Frame = -2

Query: 505 YCNQFNFRKVYELLDEMRAQGCSPNVVTYTTLMYSLAKCDEYEEALQVYERMKSDKCKPD 326
           YC++ NF KVYELLDEM AQG  PNVVTYT++M +LAK +EYEEALQ+ +RMKS  CKPD
Sbjct: 233 YCHRSNFSKVYELLDEMEAQGLIPNVVTYTSVMSALAKSEEYEEALQIAQRMKSVGCKPD 292

Query: 325 TLFYNVLIHVLGRAGRLCEAAHIFEVEMPMSGIIPSTSTYNTMIAMYCHHSQEQSALFVL 146
           TLFYN LIH LG+AGR  EA  +FEVEMP +G+ P+TSTYN+MIAM CHHSQE+ AL +L
Sbjct: 293 TLFYNSLIHTLGKAGRPEEAIQVFEVEMPNTGVPPNTSTYNSMIAMLCHHSQERKALNLL 352

Query: 145 QEMEKSTLCKPDLKTYNPLLKLCLRTGKIXXXXXXXXXDMLKKHHLSL 2
           +E+E S +CKPD++TY PLLK C + G I         DM+KKHHLSL
Sbjct: 353 KEIEASIICKPDVQTYYPLLKSCFKAGSIDSLLSQLLDDMVKKHHLSL 400



 Score = 61.2 bits (147), Expect = 8e-08
 Identities = 34/126 (26%), Positives = 58/126 (46%)
 Frame = -2

Query: 439 SPNVVTYTTLMYSLAKCDEYEEALQVYERMKSDKCKPDTLFYNVLIHVLGRAGRLCEAAH 260
           SPN  T+   ++   K +  EEA    + MK   C P  + Y+ ++          +   
Sbjct: 185 SPNANTFNIFIHGWCKVNRVEEAYWTIQEMKGHGCTPCVISYSTIVQFYCHRSNFSKVYE 244

Query: 259 IFEVEMPMSGIIPSTSTYNTMIAMYCHHSQEQSALFVLQEMEKSTLCKPDLKTYNPLLKL 80
           + + EM   G+IP+  TY ++++      + + AL + Q M KS  CKPD   YN L+  
Sbjct: 245 LLD-EMEAQGLIPNVVTYTSVMSALAKSEEYEEALQIAQRM-KSVGCKPDTLFYNSLIHT 302

Query: 79  CLRTGK 62
             + G+
Sbjct: 303 LGKAGR 308


>ref|XP_004159705.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04130,
           mitochondrial-like [Cucumis sativus]
          Length = 488

 Score =  218 bits (556), Expect = 3e-55
 Identities = 103/168 (61%), Positives = 129/168 (76%)
 Frame = -2

Query: 505 YCNQFNFRKVYELLDEMRAQGCSPNVVTYTTLMYSLAKCDEYEEALQVYERMKSDKCKPD 326
           YC++ NF KVYELLDEM AQGC  NV+TYTT+M SL K +E+EEALQ+ ERMKS   +PD
Sbjct: 255 YCHRCNFNKVYELLDEMDAQGCPANVITYTTIMCSLTKSEEFEEALQIAERMKSAGYEPD 314

Query: 325 TLFYNVLIHVLGRAGRLCEAAHIFEVEMPMSGIIPSTSTYNTMIAMYCHHSQEQSALFVL 146
           TLFYN LIH LGRAG++ EA H+FEVEMP   ++P+TSTYN+MIAMYC  ++E+ A+ +L
Sbjct: 315 TLFYNCLIHTLGRAGKVREAIHVFEVEMPSKSVLPNTSTYNSMIAMYCRRAREEKAMKLL 374

Query: 145 QEMEKSTLCKPDLKTYNPLLKLCLRTGKIXXXXXXXXXDMLKKHHLSL 2
           +EM+KS  CKPD++TY PLLK C RTGK          +M+ KHHLSL
Sbjct: 375 EEMQKSEHCKPDVQTYYPLLKSCFRTGKTDYDLSNLLDEMINKHHLSL 422


>ref|XP_004135302.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04130,
           mitochondrial-like [Cucumis sativus]
          Length = 519

 Score =  218 bits (556), Expect = 3e-55
 Identities = 103/168 (61%), Positives = 129/168 (76%)
 Frame = -2

Query: 505 YCNQFNFRKVYELLDEMRAQGCSPNVVTYTTLMYSLAKCDEYEEALQVYERMKSDKCKPD 326
           YC++ NF KVYELLDEM AQGC  NV+TYTT+M SL K +E+EEALQ+ ERMKS   +PD
Sbjct: 286 YCHRCNFNKVYELLDEMDAQGCPANVITYTTIMCSLTKSEEFEEALQIAERMKSAGYEPD 345

Query: 325 TLFYNVLIHVLGRAGRLCEAAHIFEVEMPMSGIIPSTSTYNTMIAMYCHHSQEQSALFVL 146
           TLFYN LIH LGRAG++ EA H+FEVEMP   ++P+TSTYN+MIAMYC  ++E+ A+ +L
Sbjct: 346 TLFYNCLIHTLGRAGKVREAIHVFEVEMPSKSVLPNTSTYNSMIAMYCRRAREEKAMKLL 405

Query: 145 QEMEKSTLCKPDLKTYNPLLKLCLRTGKIXXXXXXXXXDMLKKHHLSL 2
           +EM+KS  CKPD++TY PLLK C RTGK          +M+ KHHLSL
Sbjct: 406 EEMQKSEHCKPDVQTYYPLLKSCFRTGKTDYDLSNLLDEMINKHHLSL 453


>ref|XP_003548528.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04130,
           mitochondrial-like [Glycine max]
          Length = 490

 Score =  213 bits (542), Expect = 1e-53
 Identities = 100/168 (59%), Positives = 132/168 (78%)
 Frame = -2

Query: 505 YCNQFNFRKVYELLDEMRAQGCSPNVVTYTTLMYSLAKCDEYEEALQVYERMKSDKCKPD 326
           YC + NF +VYELLDEM+AQGCS NV+TYT++M +L K  ++EEAL+V ERM+S  C+PD
Sbjct: 257 YCQEGNFSRVYELLDEMQAQGCSANVITYTSIMCALGKAKKFEEALKVPERMRSSGCRPD 316

Query: 325 TLFYNVLIHVLGRAGRLCEAAHIFEVEMPMSGIIPSTSTYNTMIAMYCHHSQEQSALFVL 146
           TLF+N LIH LGRAGRL +AA +F+VEMP +G+ P+TSTYN+MI+M+C+H+QE+ AL +L
Sbjct: 317 TLFFNSLIHTLGRAGRLDDAADVFKVEMPKAGVSPNTSTYNSMISMFCYHAQEKRALEIL 376

Query: 145 QEMEKSTLCKPDLKTYNPLLKLCLRTGKIXXXXXXXXXDMLKKHHLSL 2
           +EME S  CKPD +TY+PL+K C R+GKI         DM+ K HLSL
Sbjct: 377 KEMENSGGCKPDAQTYHPLIKSCFRSGKIDGVLSEILNDMINKQHLSL 424