BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00038921
         (727 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002532719.1| ubiquitin-protein ligase, putative [Ricinus ...    80   4e-13
ref|XP_002308787.1| f-box family protein [Populus trichocarpa] g...    77   4e-12
ref|XP_002516806.1| conserved hypothetical protein [Ricinus comm...    74   2e-11
ref|XP_003610471.1| F-box protein [Medicago truncatula] gi|35749...    68   2e-09
ref|XP_002317261.1| predicted protein [Populus trichocarpa] gi|2...    66   6e-09

>ref|XP_002532719.1| ubiquitin-protein ligase, putative [Ricinus communis]
           gi|223527546|gb|EEF29668.1| ubiquitin-protein ligase,
           putative [Ricinus communis]
          Length = 389

 Score = 80.1 bits (196), Expect = 4e-13
 Identities = 63/203 (31%), Positives = 105/203 (51%), Gaps = 10/203 (4%)
 Frame = -3

Query: 713 TRVEVYSLGSGRWRRIENIPSCFMLMSGKEPPLLFLNGALHWEVTHRENFETYEEGNKPP 534
           + V+V+SL    WRRI ++P C +L  G+    ++ NGALHW V+             P 
Sbjct: 171 SEVKVFSLRKNSWRRIADMPYC-VLYPGENG--IYANGALHWLVS-----------QDPD 216

Query: 533 SSLVSSIAAFDIGSEKLRAFKKPPIQSWTLS-----LLGEFLCMTDEKSDHIDVWVMKDY 369
           S++  +I A D+G E      KP       +     L G    +   +S+ +DVWVM++Y
Sbjct: 217 STVADTIVALDLGVEDYHVVPKPEFVDMNCNMGVGVLQGCLSLLAYARSERVDVWVMEEY 276

Query: 368 GV--SWTKDY-VIRKDTRGPLQGTGVPIKILSTTKKG--IVLLHGDKGQGYYDLEKKEFK 204
            V  SW+K + V R +  G L+     +K L+ +K G  +++ H +    +YDL++KE  
Sbjct: 277 MVKESWSKLFSVARLEVIGILRS----LKPLAYSKSGNEVLIEHDNVNLFWYDLKRKEVV 332

Query: 203 QILIDGISMGSFEDAVVHIGSLI 135
            + I G+ + +FE A + +GSL+
Sbjct: 333 NVWIQGVPI-TFE-AEICVGSLV 353


>ref|XP_002308787.1| f-box family protein [Populus trichocarpa]
           gi|222854763|gb|EEE92310.1| f-box family protein
           [Populus trichocarpa]
          Length = 396

 Score = 77.0 bits (188), Expect = 4e-12
 Identities = 68/204 (33%), Positives = 103/204 (50%), Gaps = 10/204 (4%)
 Frame = -3

Query: 713 TRVEVYSLGSGRWRRIENIPSCFMLMSGKEPPLLFLNGALHWEVTHRENFETYEEGNKPP 534
           + V+VYSL    WRRI ++P C           +F NGALHW V           G  P 
Sbjct: 178 SEVKVYSLRKQSWRRIGDMPYCVHYPGANG---VFANGALHWVV-----------GENPE 223

Query: 533 SSLVSSIAAFDIGSEKLRAFKKPPIQSWT----LSLLGEFLC-MTDEKSDHIDVWVMKDY 369
           S++ + + A D+G E  R   +P  +       L +L   LC + +   + +DVW+MK+Y
Sbjct: 224 SNVANIVVALDLGVEDYREVLQPEYKDKNFYIDLGVLRGCLCFLANFLGERVDVWMMKEY 283

Query: 368 GV--SWTKDY-VIRKDTRGPLQGTGVPIKILSTTKKG--IVLLHGDKGQGYYDLEKKEFK 204
           GV  SWTK + V + +  G L+     +K L+ +K G  +++ H +    +YDL++K+ K
Sbjct: 284 GVKESWTKLFSVAQYEVIGFLRS----LKPLAYSKSGDEVLIEHDNLDLCWYDLKRKQVK 339

Query: 203 QILIDGISMGSFEDAVVHIGSLIS 132
              I GI   SFE A   + SLIS
Sbjct: 340 N-RIPGIPY-SFE-ADTFVESLIS 360


>ref|XP_002516806.1| conserved hypothetical protein [Ricinus communis]
           gi|223543894|gb|EEF45420.1| conserved hypothetical
           protein [Ricinus communis]
          Length = 403

 Score = 74.3 bits (181), Expect = 2e-11
 Identities = 61/205 (29%), Positives = 93/205 (45%), Gaps = 7/205 (3%)
 Frame = -3

Query: 701 VYSLGSGRWRRIENIPSCFMLMSGKEPPLLFLNGALHWEVTHRENFETYEEGNKPPSSLV 522
           VYSL +  WR+I+N    F          +FL GA+HW   +RE  +             
Sbjct: 221 VYSLRTDSWRKIDNFCHDFCFHHSG----VFLRGAIHWMAINREEVDDE----------Y 266

Query: 521 SSIAAFDIGSEKLRAFKKPPIQS----WTLSLLGEFLCMTDEKSD-HIDVWVMKDYGV-- 363
             I+AFD+  E       P ++     + L  L E LC+    ++ H D WVM +YGV  
Sbjct: 267 YVISAFDMEKELFWDMPAPDMEDDDSEFMLGTLNEDLCVLKSFNEMHNDFWVMHEYGVGE 326

Query: 362 SWTKDYVIRKDTRGPLQGTGVPIKILSTTKKGIVLLHGDKGQGYYDLEKKEFKQILIDGI 183
           SWT         R  +  + + +K L   K G  LL  D     Y+LE   +K++++ GI
Sbjct: 327 SWT---------RLTISLSYICMKPLCLAKNGEALLDIDGRLVQYNLENNTYKELVVHGI 377

Query: 182 SMGSFEDAVVHIGSLISPRSLAGTD 108
            +G   +A  +I +LISP   +G +
Sbjct: 378 PVGVGFEADTYIETLISPNDYSGRE 402


>ref|XP_003610471.1| F-box protein [Medicago truncatula]
           gi|357497945|ref|XP_003619261.1| F-box protein [Medicago
           truncatula] gi|355494276|gb|AES75479.1| F-box protein
           [Medicago truncatula] gi|355511526|gb|AES92668.1| F-box
           protein [Medicago truncatula]
          Length = 259

 Score = 67.8 bits (164), Expect = 2e-09
 Identities = 55/205 (26%), Positives = 98/205 (47%), Gaps = 9/205 (4%)
 Frame = -3

Query: 716 RTRVEVYSLGSGRWRRIENIPSCFMLMSGKEPPLLFLNGALHWEVTHRENFETYEEGNKP 537
           +T+V  ++LG+  W+RI + PS    +  +E P  F++G ++W +  +E +  +      
Sbjct: 72  KTQVRAHTLGTNFWKRIPDFPSEITGLP-EECPGKFVSGTINWAIEDQEKYYLWV----- 125

Query: 536 PSSLVSSIAAFDIGSEKLRAFKKP------PIQSWTLSLLGEFLCMTDEKSDHIDVWVMK 375
                  I + D+G+E  +    P      P+    LS+  + LC+    +  +D+W+MK
Sbjct: 126 -------ILSLDLGNESYQVIPHPEYGLDEPLVYLNLSVSKDCLCVVAHTNSFLDIWLMK 178

Query: 374 DYG--VSWTKDYVIRKDTRGPLQGTGVPIKILSTTKKG-IVLLHGDKGQGYYDLEKKEFK 204
            YG   SWTK + I  +    L G  +P  +L   ++G +V L        Y+ +    K
Sbjct: 179 VYGNKDSWTKLFTIPFE---KLIGCPLPASLLYIAEEGDLVFLDLFDNVYIYNYKNGNVK 235

Query: 203 QILIDGISMGSFEDAVVHIGSLISP 129
              I G+   SF +++V+  SLISP
Sbjct: 236 IPDIQGLPSNSF-NSIVYFESLISP 259


>ref|XP_002317261.1| predicted protein [Populus trichocarpa] gi|222860326|gb|EEE97873.1|
           predicted protein [Populus trichocarpa]
          Length = 410

 Score = 66.2 bits (160), Expect = 6e-09
 Identities = 62/207 (29%), Positives = 94/207 (45%), Gaps = 11/207 (5%)
 Frame = -3

Query: 719 VRTRVEVYSLGSGRWRRIENIP--SCFMLMSGKEPPLLFLNGALHWEVTHRENFETYEEG 546
           +R+  E+   G   W+ I  IP   C           + LNGALHW +    N + YE+ 
Sbjct: 206 LRSEGEICIFGDNEWKSIGEIPFPDCKKFFG------VSLNGALHWIL----NLDDYEDA 255

Query: 545 NKPPSSLVSSIAAFDIGSEKLRAFKKP-----PIQSWTLSLLGEFLCMTDEKSDH-IDVW 384
           +         I A DI S+K+R    P          TL +L + L + D  + + +D+W
Sbjct: 256 DL--------ICALDIDSKKIRPMSPPNGFRRDTTEMTLGVLRDCLFICDSMTLYNLDIW 307

Query: 383 VMKDYGV--SWTKDYVIRKDTRGPLQGTGVPIKILSTTKKGIVLLHGDKGQ-GYYDLEKK 213
           VMK+YGV  SWTK+ VI K T  P       ++ +  +K G VL+  D     +YD   K
Sbjct: 308 VMKEYGVKDSWTKEIVIAK-TSLPSNLQNSFLQPIMVSKDGEVLISSDSNVFVWYDPGSK 366

Query: 212 EFKQILIDGISMGSFEDAVVHIGSLIS 132
            F ++ +    +G   +AV  + S  S
Sbjct: 367 SFTKVTLPS-RVGYEFEAVCSVASFDS 392