BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00038911
         (383 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002264696.1| PREDICTED: pentatricopeptide repeat-containi...   149   2e-34
emb|CAN60200.1| hypothetical protein VITISV_039678 [Vitis vinifera]   149   2e-34
ref|XP_002512558.1| pentatricopeptide repeat-containing protein,...   126   2e-27
sp|Q0WP85.1|PP150_ARATH RecName: Full=Pentatricopeptide repeat-c...   119   3e-25
ref|XP_002306265.1| predicted protein [Populus trichocarpa] gi|2...   117   7e-25

>ref|XP_002264696.1| PREDICTED: pentatricopeptide repeat-containing protein At2g13420,
           mitochondrial [Vitis vinifera]
           gi|296088528|emb|CBI37519.3| unnamed protein product
           [Vitis vinifera]
          Length = 525

 Score =  149 bits (377), Expect = 2e-34
 Identities = 73/104 (70%), Positives = 90/104 (86%)
 Frame = -3

Query: 312 SSALPTYQPSNDADTISNLLIQQHNPFHTMESSLQLNGITLSSNLVHQSLLRLKHVSKIA 133
           S+ LP+ QPS DAD IS +L+Q HNPFH MESSLQLNGI LS++LVHQ+LLRL++VSKIA
Sbjct: 41  STGLPSLQPSYDADLISKILLQHHNPFHAMESSLQLNGIALSTHLVHQTLLRLRNVSKIA 100

Query: 132 LAFFLWAKKENPSIYTHDIMSYNLMIDILGKVRQFDVAWQLIIE 1
           L+FFLWAK +  + ++HD++SYNL+IDIL KVRQFDVAWQ IIE
Sbjct: 101 LSFFLWAKDQ--AHHSHDVVSYNLIIDILAKVRQFDVAWQFIIE 142


>emb|CAN60200.1| hypothetical protein VITISV_039678 [Vitis vinifera]
          Length = 525

 Score =  149 bits (377), Expect = 2e-34
 Identities = 73/104 (70%), Positives = 90/104 (86%)
 Frame = -3

Query: 312 SSALPTYQPSNDADTISNLLIQQHNPFHTMESSLQLNGITLSSNLVHQSLLRLKHVSKIA 133
           S+ LP+ QPS DAD IS +L+Q HNPFH MESSLQLNGI LS++LVHQ+LLRL++VSKIA
Sbjct: 41  STGLPSLQPSYDADLISKILLQHHNPFHAMESSLQLNGIALSTHLVHQTLLRLRNVSKIA 100

Query: 132 LAFFLWAKKENPSIYTHDIMSYNLMIDILGKVRQFDVAWQLIIE 1
           L+FFLWAK +  + ++HD++SYNL+IDIL KVRQFDVAWQ IIE
Sbjct: 101 LSFFLWAKDQ--AHHSHDVVSYNLIIDILAKVRQFDVAWQFIIE 142


>ref|XP_002512558.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223548519|gb|EEF50010.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 511

 Score =  126 bits (317), Expect = 2e-27
 Identities = 67/125 (53%), Positives = 91/125 (72%)
 Frame = -3

Query: 375 LKISRNLSSLPEELHKLQTNPSSALPTYQPSNDADTISNLLIQQHNPFHTMESSLQLNGI 196
           L  +R L + P  L       + +LP+ +PSNDA+ +S +L+  HNPFH MESSLQL+GI
Sbjct: 6   LSQTRTLLTSPPNLRVQCLFSTFSLPSLEPSNDAEIVSEILLNHHNPFHAMESSLQLHGI 65

Query: 195 TLSSNLVHQSLLRLKHVSKIALAFFLWAKKENPSIYTHDIMSYNLMIDILGKVRQFDVAW 16
           TLSS+L+HQ+LLRL+H SKIAL+FF ++     S  + +  +YNL+IDIL KVRQFDV+W
Sbjct: 66  TLSSSLLHQTLLRLRHNSKIALSFFHYSLSLPSS--SVNTTTYNLIIDILSKVRQFDVSW 123

Query: 15  QLIIE 1
           QLII+
Sbjct: 124 QLIIQ 128


>sp|Q0WP85.1|PP150_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g13420, mitochondrial; Flags: Precursor
           gi|110738270|dbj|BAF01064.1| hypothetical protein
           [Arabidopsis thaliana]
          Length = 509

 Score =  119 bits (298), Expect = 3e-25
 Identities = 68/126 (53%), Positives = 88/126 (69%), Gaps = 9/126 (7%)
 Frame = -3

Query: 351 SLPEELHKLQTNPSSA--------LPTYQPSNDADTISNLLIQQHNPFHTMESSLQLNGI 196
           S P  LH+L+   S+         LP  +PS+DA+ IS +LI  HNPFH MESSLQLNGI
Sbjct: 8   SPPFHLHQLRRRISTIISAGFTLNLPKLEPSSDAELISQMLITNHNPFHFMESSLQLNGI 67

Query: 195 TLSSNLVHQSLLRLKHVSKIALAFFLWAKK-ENPSIYTHDIMSYNLMIDILGKVRQFDVA 19
           +L+ NL+HQ+LLRL+H SKIAL+FF + +   +PS       S+NL+IDILG+VRQFDV 
Sbjct: 68  SLTPNLIHQTLLRLRHNSKIALSFFQYLRSLPSPSTTP---TSFNLIIDILGRVRQFDVV 124

Query: 18  WQLIIE 1
            QLI+E
Sbjct: 125 RQLIVE 130


>ref|XP_002306265.1| predicted protein [Populus trichocarpa] gi|222855714|gb|EEE93261.1|
           predicted protein [Populus trichocarpa]
          Length = 548

 Score =  117 bits (294), Expect = 7e-25
 Identities = 64/118 (54%), Positives = 79/118 (66%), Gaps = 17/118 (14%)
 Frame = -3

Query: 303 LPTYQPSNDADTISNLLIQQHNPFHTMESSLQLNGITLSSNLVHQSLLRLKHVSKIALAF 124
           LPT QPSNDAD +S +L+  HNPFH MESSLQL GI+L+ +L+HQ+LLRL+H SKIAL+ 
Sbjct: 48  LPTLQPSNDADLLSQILLHHHNPFHAMESSLQLPGISLTPSLLHQTLLRLRHNSKIALSL 107

Query: 123 FLWA------KKENP-----------SIYTHDIMSYNLMIDILGKVRQFDVAWQLIIE 1
           F  +        +NP              T   ++YNLMIDIL KVRQFDV WQLI+E
Sbjct: 108 FHHSLSLPPTSTDNPPTSTGTSTTSADSSTATTVTYNLMIDILAKVRQFDVCWQLIVE 165