BLASTX nr result
ID: Coptis21_contig00038909
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis21_contig00038909
(287 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002276935.1| PREDICTED: pentatricopeptide repeat-containi... 109 2e-22
ref|XP_003609573.1| Pentatricopeptide repeat-containing protein ... 107 8e-22
ref|XP_002314475.1| predicted protein [Populus trichocarpa] gi|2... 105 5e-21
ref|XP_003528655.1| PREDICTED: pentatricopeptide repeat-containi... 101 6e-20
ref|XP_002516850.1| pentatricopeptide repeat-containing protein,... 96 3e-18
>ref|XP_002276935.1| PREDICTED: pentatricopeptide repeat-containing protein At2g36980,
mitochondrial-like [Vitis vinifera]
Length = 623
Score = 109 bits (273), Expect = 2e-22
Identities = 48/95 (50%), Positives = 66/95 (69%)
Frame = -1
Query: 287 FSQCGQTEMCMNLFKKMKANTCSPDVWTYTALMSTCSELAEPFHGRAIHACIVISGWSSA 108
+ QCG E+C+ LFKKM+ ++ PD WT++AL++ EL EP +G +H I+ SGW A
Sbjct: 178 YGQCGDVELCLGLFKKMREDSLQPDQWTFSALVNALCELQEPSYGYMMHGFIIKSGWVKA 237
Query: 107 VAVKNSVLSYYAKLSYHDDAVKIFESISSPTQVSW 3
V V NS+LS+Y+KL DD +K+FESI TQVSW
Sbjct: 238 VEVSNSILSFYSKLGCKDDVMKVFESIGILTQVSW 272
Score = 68.2 bits (165), Expect = 7e-10
Identities = 35/95 (36%), Positives = 53/95 (55%)
Frame = -1
Query: 287 FSQCGQTEMCMNLFKKMKANTCSPDVWTYTALMSTCSELAEPFHGRAIHACIVISGWSSA 108
+SQ G + + LF M+ PD +T+TA +S C+ L E G IHA +V+SG S+
Sbjct: 46 YSQLGLHQQALCLFHHMRIANSRPDRFTFTATLSACAGLGELRRGMKIHAQVVVSGCQSS 105
Query: 107 VAVKNSVLSYYAKLSYHDDAVKIFESISSPTQVSW 3
+ V NS++ Y K A ++FE +S +VSW
Sbjct: 106 LPVGNSLIDMYGKCLSATSARRVFEEMSIMNEVSW 140
Score = 58.2 bits (139), Expect = 7e-07
Identities = 31/95 (32%), Positives = 49/95 (51%)
Frame = -1
Query: 287 FSQCGQTEMCMNLFKKMKANTCSPDVWTYTALMSTCSELAEPFHGRAIHACIVISGWSSA 108
+++ G E ++ F KM N PD +T+ A++ CS LA HG+ IH I+ G+ +
Sbjct: 310 YARNGHGEQALSFFVKMMENHIQPDDFTFGAVLHACSSLATLGHGKMIHGSIIHYGFHAY 369
Query: 107 VAVKNSVLSYYAKLSYHDDAVKIFESISSPTQVSW 3
V V N +++ YAK + F+ I VSW
Sbjct: 370 VDVGNGLVNMYAKCGDIQGSNTAFKEILGKDLVSW 404
>ref|XP_003609573.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355510628|gb|AES91770.1| Pentatricopeptide
repeat-containing protein [Medicago truncatula]
Length = 665
Score = 107 bits (268), Expect = 8e-22
Identities = 47/94 (50%), Positives = 66/94 (70%)
Frame = -1
Query: 284 SQCGQTEMCMNLFKKMKANTCSPDVWTYTALMSTCSELAEPFHGRAIHACIVISGWSSAV 105
++CG+ E C++LFK+M N PD WT++ALMS C+E E HG +H ++ SGWS+A+
Sbjct: 180 ARCGEVEACLHLFKEMCENLYQPDQWTFSALMSACTESMESLHGCMMHCFVIKSGWSTAM 239
Query: 104 AVKNSVLSYYAKLSYHDDAVKIFESISSPTQVSW 3
V NS++S+YAKL H DAVK+F S + QVSW
Sbjct: 240 EVNNSIVSFYAKLECHGDAVKVFNSGGAFNQVSW 273
Score = 58.9 bits (141), Expect = 4e-07
Identities = 27/96 (28%), Positives = 59/96 (61%), Gaps = 1/96 (1%)
Frame = -1
Query: 287 FSQCGQTEMCMNLFKKMKANTCS-PDVWTYTALMSTCSELAEPFHGRAIHACIVISGWSS 111
+S+ G + +LF M+ + S PD ++Y+A +++C+ ++ G +H+ +V+SG+ S
Sbjct: 46 YSRLGLYQQTFDLFDSMRRISDSKPDNFSYSAAINSCAGASDIRFGTKLHSLVVVSGYQS 105
Query: 110 AVAVKNSVLSYYAKLSYHDDAVKIFESISSPTQVSW 3
++ V N+++ Y K +DA K+F+ ++ +V+W
Sbjct: 106 SLPVANALIDMYGKCFNPNDARKVFDEMNYSNEVTW 141
>ref|XP_002314475.1| predicted protein [Populus trichocarpa] gi|222863515|gb|EEF00646.1|
predicted protein [Populus trichocarpa]
Length = 492
Score = 105 bits (261), Expect = 5e-21
Identities = 46/93 (49%), Positives = 68/93 (73%)
Frame = -1
Query: 281 QCGQTEMCMNLFKKMKANTCSPDVWTYTALMSTCSELAEPFHGRAIHACIVISGWSSAVA 102
Q G+ E+C+ +FK+M+ + C PD WTY+AL+S +E E +G +HA ++ +GWSSA+
Sbjct: 49 QYGEIELCLEMFKEMRESLCEPDQWTYSALISAFTESLELVYGCMMHAVVIKTGWSSAME 108
Query: 101 VKNSVLSYYAKLSYHDDAVKIFESISSPTQVSW 3
NS+LS+YAKL +DAVK+FES+ + TQVSW
Sbjct: 109 ANNSILSFYAKLGSLNDAVKVFESMGTLTQVSW 141
>ref|XP_003528655.1| PREDICTED: pentatricopeptide repeat-containing protein At2g36980,
mitochondrial-like [Glycine max]
Length = 629
Score = 101 bits (252), Expect = 6e-20
Identities = 44/91 (48%), Positives = 63/91 (69%)
Frame = -1
Query: 275 GQTEMCMNLFKKMKANTCSPDVWTYTALMSTCSELAEPFHGRAIHACIVISGWSSAVAVK 96
G+ E C++LFK+M + C PD WT++AL++ C+ E +G +H ++ SGWSSA+ VK
Sbjct: 184 GEVEACLHLFKEMCGSLCQPDQWTFSALINACAVSMEMLYGCMVHGFVIKSGWSSAMEVK 243
Query: 95 NSVLSYYAKLSYHDDAVKIFESISSPTQVSW 3
NS+LS+YAKL DDA+K+F S QVSW
Sbjct: 244 NSMLSFYAKLECQDDAMKVFNSFGCFNQVSW 274
Score = 62.4 bits (150), Expect = 4e-08
Identities = 29/97 (29%), Positives = 56/97 (57%), Gaps = 2/97 (2%)
Frame = -1
Query: 287 FSQCGQTEMCMNLFKKMKANTCSPDVWTYTALMSTCSELAEPF--HGRAIHACIVISGWS 114
+S G + ++LF M+ + PD ++++A+++ C+ + G +HA +V+SG+
Sbjct: 46 YSHVGLYQQSLSLFGCMRISHSKPDNFSFSAVLNACACAGASYVRFGATLHALVVVSGYL 105
Query: 113 SAVAVKNSVLSYYAKLSYHDDAVKIFESISSPTQVSW 3
S++ V NS++ Y K DDA K+F+ S +V+W
Sbjct: 106 SSLPVANSLIDMYGKCLLPDDARKVFDETSDSNEVTW 142
>ref|XP_002516850.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223543938|gb|EEF45464.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 623
Score = 95.9 bits (237), Expect = 3e-18
Identities = 42/91 (46%), Positives = 62/91 (68%)
Frame = -1
Query: 275 GQTEMCMNLFKKMKANTCSPDVWTYTALMSTCSELAEPFHGRAIHACIVISGWSSAVAVK 96
G+ E+C+++F++M+ + PD WTY+AL+S C+E E G +H ++ SGWSSA+ K
Sbjct: 182 GEIELCLDMFREMRESLLEPDQWTYSALISACTESLEFLSGCMLHGLVIRSGWSSAMEAK 241
Query: 95 NSVLSYYAKLSYHDDAVKIFESISSPTQVSW 3
NS+LS YAK +DA+K+ ES TQVSW
Sbjct: 242 NSILSLYAKFGSLNDALKVVESTGRLTQVSW 272
Score = 60.1 bits (144), Expect = 2e-07
Identities = 29/95 (30%), Positives = 52/95 (54%)
Frame = -1
Query: 287 FSQCGQTEMCMNLFKKMKANTCSPDVWTYTALMSTCSELAEPFHGRAIHACIVISGWSSA 108
+SQ G + +++F +M+ PD +T+TA +S C+ G IHA ++I G+ S+
Sbjct: 46 YSQLGFHQEALSIFYQMRNTNTKPDHFTFTATLSACAGAGSFPFGTKIHALVIILGYHSS 105
Query: 107 VAVKNSVLSYYAKLSYHDDAVKIFESISSPTQVSW 3
+ V NS++ Y K A ++F+ + +VSW
Sbjct: 106 LPVNNSLIDMYGKCFDAFSAGQVFKEMGDINEVSW 140
Score = 59.3 bits (142), Expect = 3e-07
Identities = 30/95 (31%), Positives = 52/95 (54%)
Frame = -1
Query: 287 FSQCGQTEMCMNLFKKMKANTCSPDVWTYTALMSTCSELAEPFHGRAIHACIVISGWSSA 108
+++ G E + F M +N PD +T+ A++ CS LA HGR +H C + +G+S+
Sbjct: 310 YARNGYGEEALRFFVAMASNCFLPDDFTFGAVLHACSSLAVLGHGRMVHGCAIRNGFSTY 369
Query: 107 VAVKNSVLSYYAKLSYHDDAVKIFESISSPTQVSW 3
+ V N +++ YAK D ++ F I + VS+
Sbjct: 370 LYVGNGLVNMYAKCGDLDGSILAFHDICAKDLVSF 404