BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00038842
         (456 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002278390.1| PREDICTED: pentatricopeptide repeat-containi...   172   3e-41
ref|XP_002884032.1| pentatricopeptide repeat-containing protein ...   171   4e-41
dbj|BAF01049.1| hypothetical protein [Arabidopsis thaliana]           171   4e-41
ref|NP_565402.1| pentatricopeptide repeat-containing protein [Ar...   171   4e-41
ref|NP_849962.1| pentatricopeptide repeat-containing protein [Ar...   171   4e-41

>ref|XP_002278390.1| PREDICTED: pentatricopeptide repeat-containing protein At2g17033
           [Vitis vinifera] gi|297744557|emb|CBI37819.3| unnamed
           protein product [Vitis vinifera]
          Length = 435

 Score =  172 bits (436), Expect = 3e-41
 Identities = 83/125 (66%), Positives = 96/125 (76%)
 Frame = -3

Query: 454 MEELQKDEIVLIQELKDSSVLVDLLEWSSMEGKLDLHGMHLGCVYVIMLQWIEELRSRFS 275
           ME L+ DE +L++EL  S VL +L+EW   EGKLDLHGMHLG  Y+IMLQW EELR R +
Sbjct: 311 METLKGDEALLVKELIGSMVLAELMEWDCSEGKLDLHGMHLGSAYLIMLQWREELRYRLN 370

Query: 274 DENSVIPAEIVVVCGLGKHSSIRGESPVKALVLEMMVRLSSPMRIDRKNIGCFVAKGKNV 95
               V+P EI VVCG GKHSS+RGESPVK +V EMM R  SPM+IDRKNIGCFVAK K V
Sbjct: 371 AAEYVMPVEITVVCGSGKHSSVRGESPVKRMVREMMTRTRSPMKIDRKNIGCFVAKAKVV 430

Query: 94  RNWLC 80
           +NWLC
Sbjct: 431 KNWLC 435


>ref|XP_002884032.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata] gi|297329872|gb|EFH60291.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 504

 Score =  171 bits (434), Expect = 4e-41
 Identities = 79/122 (64%), Positives = 101/122 (82%)
 Frame = -3

Query: 445 LQKDEIVLIQELKDSSVLVDLLEWSSMEGKLDLHGMHLGCVYVIMLQWIEELRSRFSDEN 266
           L +DE +L+ EL  S+VL + +EW+++EGKLDLHGMHL   Y+I+LQW++E+R RF D+ 
Sbjct: 382 LNEDEALLVLELTQSTVLDEAIEWNAVEGKLDLHGMHLSSSYLILLQWMDEIRLRFRDQK 441

Query: 265 SVIPAEIVVVCGLGKHSSIRGESPVKALVLEMMVRLSSPMRIDRKNIGCFVAKGKNVRNW 86
            VIPAEIVVV G GKHS++RGESPVKALV ++MVR  SPMRIDRKN+G F+AKGKNV+ W
Sbjct: 442 CVIPAEIVVVSGSGKHSNVRGESPVKALVKKIMVRTESPMRIDRKNVGSFIAKGKNVKEW 501

Query: 85  LC 80
           LC
Sbjct: 502 LC 503


>dbj|BAF01049.1| hypothetical protein [Arabidopsis thaliana]
          Length = 501

 Score =  171 bits (434), Expect = 4e-41
 Identities = 80/122 (65%), Positives = 100/122 (81%)
 Frame = -3

Query: 445 LQKDEIVLIQELKDSSVLVDLLEWSSMEGKLDLHGMHLGCVYVIMLQWIEELRSRFSDEN 266
           L +DE +L+ EL  SSVL + +EW+++EGKLDLHGMHL   Y+I+LQW++E R RFS+E 
Sbjct: 379 LNEDEALLVHELTQSSVLDEAIEWNAVEGKLDLHGMHLSSSYLILLQWMDETRLRFSEEK 438

Query: 265 SVIPAEIVVVCGLGKHSSIRGESPVKALVLEMMVRLSSPMRIDRKNIGCFVAKGKNVRNW 86
            VIPAEIVVV G GKHS++RGESPVKALV ++MVR  SPMRIDRKN+G F+AKGK V+ W
Sbjct: 439 CVIPAEIVVVSGSGKHSNVRGESPVKALVKKIMVRTGSPMRIDRKNVGSFIAKGKTVKEW 498

Query: 85  LC 80
           LC
Sbjct: 499 LC 500


>ref|NP_565402.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|13877877|gb|AAK44016.1|AF370201_1 unknown protein
           [Arabidopsis thaliana] gi|21280879|gb|AAM44931.1|
           unknown protein [Arabidopsis thaliana]
           gi|330251481|gb|AEC06575.1| pentatricopeptide
           repeat-containing protein [Arabidopsis thaliana]
          Length = 504

 Score =  171 bits (434), Expect = 4e-41
 Identities = 80/122 (65%), Positives = 100/122 (81%)
 Frame = -3

Query: 445 LQKDEIVLIQELKDSSVLVDLLEWSSMEGKLDLHGMHLGCVYVIMLQWIEELRSRFSDEN 266
           L +DE +L+ EL  SSVL + +EW+++EGKLDLHGMHL   Y+I+LQW++E R RFS+E 
Sbjct: 382 LNEDEALLVHELTQSSVLDEAIEWNAVEGKLDLHGMHLSSSYLILLQWMDETRLRFSEEK 441

Query: 265 SVIPAEIVVVCGLGKHSSIRGESPVKALVLEMMVRLSSPMRIDRKNIGCFVAKGKNVRNW 86
            VIPAEIVVV G GKHS++RGESPVKALV ++MVR  SPMRIDRKN+G F+AKGK V+ W
Sbjct: 442 CVIPAEIVVVSGSGKHSNVRGESPVKALVKKIMVRTGSPMRIDRKNVGSFIAKGKTVKEW 501

Query: 85  LC 80
           LC
Sbjct: 502 LC 503


>ref|NP_849962.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|75244359|sp|Q8GWA9.1|PP157_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At2g17033 gi|26452937|dbj|BAC43545.1| unknown protein
           [Arabidopsis thaliana] gi|330251482|gb|AEC06576.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           thaliana]
          Length = 505

 Score =  171 bits (434), Expect = 4e-41
 Identities = 80/122 (65%), Positives = 100/122 (81%)
 Frame = -3

Query: 445 LQKDEIVLIQELKDSSVLVDLLEWSSMEGKLDLHGMHLGCVYVIMLQWIEELRSRFSDEN 266
           L +DE +L+ EL  SSVL + +EW+++EGKLDLHGMHL   Y+I+LQW++E R RFS+E 
Sbjct: 383 LNEDEALLVHELTQSSVLDEAIEWNAVEGKLDLHGMHLSSSYLILLQWMDETRLRFSEEK 442

Query: 265 SVIPAEIVVVCGLGKHSSIRGESPVKALVLEMMVRLSSPMRIDRKNIGCFVAKGKNVRNW 86
            VIPAEIVVV G GKHS++RGESPVKALV ++MVR  SPMRIDRKN+G F+AKGK V+ W
Sbjct: 443 CVIPAEIVVVSGSGKHSNVRGESPVKALVKKIMVRTGSPMRIDRKNVGSFIAKGKTVKEW 502

Query: 85  LC 80
           LC
Sbjct: 503 LC 504