BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00038769
         (607 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002533531.1| nonsense-mediated mRNA decay protein, putati...   194   1e-47
ref|XP_002265288.1| PREDICTED: 60S ribosomal export protein NMD3...   193   2e-47
ref|XP_002306035.1| predicted protein [Populus trichocarpa] gi|2...   189   3e-46
ref|XP_002305882.1| predicted protein [Populus trichocarpa] gi|2...   189   4e-46
emb|CAN60703.1| hypothetical protein VITISV_003522 [Vitis vinifera]   187   1e-45

>ref|XP_002533531.1| nonsense-mediated mRNA decay protein, putative [Ricinus communis]
           gi|223526598|gb|EEF28848.1| nonsense-mediated mRNA decay
           protein, putative [Ricinus communis]
          Length = 511

 Score =  194 bits (492), Expect = 1e-47
 Identities = 103/167 (61%), Positives = 123/167 (73%), Gaps = 6/167 (3%)
 Frame = -2

Query: 549 KYALADVEVARLSDFGKNNIIFTVKTHIGHLLNPGDQALGYDLYGVNINDLGFGKYKRFE 370
           KYA+A+V+VARLSDFGKN+ IF +KTH+GH+L PGDQALGYDLYG N ND+   KYK   
Sbjct: 337 KYAMAEVQVARLSDFGKNDTIFFIKTHLGHILKPGDQALGYDLYGANSNDIELDKYKGLV 396

Query: 369 LPGVVLI-----XXXXXXXXXXXXXKLKSMNMEVEDLCKKIDKEKLDTEYEEFLKDLEEN 205
           LP  +LI                  KLKS+ MEV+D   + D+EK+DTEYE+FL+DLEEN
Sbjct: 397 LPEAILIKKSYEEKRQRKRGKPRAWKLKSLEMEVDDSRGRNDQEKMDTEYEQFLRDLEEN 456

Query: 204 PELRFNISLYRNKAYQPSEVASNTERVDVP-IPLEELLADLGISDEE 67
            ELRFN+SLYRNK YQPSE+AS T+  DVP IPLEELLADL IS+ E
Sbjct: 457 AELRFNVSLYRNKEYQPSEMASVTDGEDVPSIPLEELLADLDISEME 503


>ref|XP_002265288.1| PREDICTED: 60S ribosomal export protein NMD3-like [Vitis vinifera]
          Length = 510

 Score =  193 bits (491), Expect = 2e-47
 Identities = 100/167 (59%), Positives = 124/167 (74%), Gaps = 6/167 (3%)
 Frame = -2

Query: 549 KYALADVEVARLSDFGKNNIIFTVKTHIGHLLNPGDQALGYDLYGVNINDLGFGKYKRFE 370
           KYALAD +VAR+SDFGKN+ IF ++TH+GHLLNPGD ALGYD+Y  N ND+   KY+ F 
Sbjct: 336 KYALADAQVARVSDFGKNDTIFNIRTHLGHLLNPGDHALGYDVYAANSNDMELEKYRGFV 395

Query: 369 LPGVVLI-----XXXXXXXXXXXXXKLKSMNMEVEDLCKKIDKEKLDTEYEEFLKDLEEN 205
           LP  +LI                  KLKS+NMEV+D   + D+EK++TEYE FL+DLEE+
Sbjct: 396 LPEAILIKKSYEEKRQRKRGKPRSWKLKSLNMEVDDSKGRADQEKMNTEYEVFLRDLEED 455

Query: 204 PELRFNISLYRNKAYQPSEVASNTERVDVP-IPLEELLADLGISDEE 67
           PELRFNISLYRNK YQPSE+AS T+  D+P +PLEELLADL +S+EE
Sbjct: 456 PELRFNISLYRNKEYQPSEMASMTDGEDLPSVPLEELLADLDLSEEE 502


>ref|XP_002306035.1| predicted protein [Populus trichocarpa] gi|222848999|gb|EEE86546.1|
           predicted protein [Populus trichocarpa]
          Length = 511

 Score =  189 bits (480), Expect = 3e-46
 Identities = 96/167 (57%), Positives = 122/167 (73%), Gaps = 6/167 (3%)
 Frame = -2

Query: 549 KYALADVEVARLSDFGKNNIIFTVKTHIGHLLNPGDQALGYDLYGVNINDLGFGKYKRFE 370
           +YALAD  VAR+SDFGKN+ +F +KTH+GH+L PGD ALGYDL+G N ND+   KYK   
Sbjct: 337 RYALADATVARMSDFGKNDTMFNIKTHLGHILKPGDYALGYDLHGANSNDMELDKYKNLV 396

Query: 369 LPGVVLIXXXXXXXXXXXXXK-----LKSMNMEVEDLCKKIDKEKLDTEYEEFLKDLEEN 205
           +P  +L+             K     LKS+NMEV+D   + D+EK+++EYE+FL+DLEEN
Sbjct: 397 IPEAILVKKSYEEKRQRKRGKPRSWKLKSLNMEVDDTRARGDQEKMNSEYEQFLRDLEEN 456

Query: 204 PELRFNISLYRNKAYQPSEVASNTERVDVP-IPLEELLADLGISDEE 67
           PELRFN+SLYRNK YQPSE+AS T+  D+P IPLEELLADL I+D E
Sbjct: 457 PELRFNVSLYRNKEYQPSEMASMTDGEDIPSIPLEELLADLEINDAE 503


>ref|XP_002305882.1| predicted protein [Populus trichocarpa] gi|222848846|gb|EEE86393.1|
           predicted protein [Populus trichocarpa]
          Length = 511

 Score =  189 bits (479), Expect = 4e-46
 Identities = 96/167 (57%), Positives = 121/167 (72%), Gaps = 6/167 (3%)
 Frame = -2

Query: 549 KYALADVEVARLSDFGKNNIIFTVKTHIGHLLNPGDQALGYDLYGVNINDLGFGKYKRFE 370
           +YALAD  VAR+SDFGKN+ +F +KTH+GH+L PGD ALGYDL+G N ND+   KYK   
Sbjct: 337 RYALADATVARMSDFGKNDTMFNIKTHLGHILKPGDYALGYDLHGANSNDMELDKYKNLV 396

Query: 369 LPGVVLIXXXXXXXXXXXXXK-----LKSMNMEVEDLCKKIDKEKLDTEYEEFLKDLEEN 205
           +P  +L+             K     LKS+NMEV+D   + D+EK+++EYE+FL+DLEEN
Sbjct: 397 IPEAILVKKSYEEKRQRKRGKPRSWKLKSLNMEVDDTRARGDQEKMNSEYEQFLRDLEEN 456

Query: 204 PELRFNISLYRNKAYQPSEVASNTERVDVP-IPLEELLADLGISDEE 67
           PELRFN+SLYRNK YQPSE+AS T+  D+P IPLEELLADL I D E
Sbjct: 457 PELRFNVSLYRNKEYQPSEMASMTDGEDIPSIPLEELLADLEIDDAE 503


>emb|CAN60703.1| hypothetical protein VITISV_003522 [Vitis vinifera]
          Length = 594

 Score =  187 bits (476), Expect = 1e-45
 Identities = 97/164 (59%), Positives = 121/164 (73%), Gaps = 6/164 (3%)
 Frame = -2

Query: 549 KYALADVEVARLSDFGKNNIIFTVKTHIGHLLNPGDQALGYDLYGVNINDLGFGKYKRFE 370
           KYALAD +VAR+SDFGKN+ IF ++TH+GHLLNPGD ALGYD+Y  N ND+   KY+ F 
Sbjct: 336 KYALADAQVARVSDFGKNDTIFNIRTHLGHLLNPGDHALGYDVYAANSNDMELEKYRGFV 395

Query: 369 LPGVVLI-----XXXXXXXXXXXXXKLKSMNMEVEDLCKKIDKEKLDTEYEEFLKDLEEN 205
           LP  +LI                  KLKS+NMEV+D   + D+EK++TEYE FL+DLEE+
Sbjct: 396 LPEAILIKKSYEEKRQRKRGKPRSWKLKSLNMEVDDSKGRADQEKMNTEYEVFLRDLEED 455

Query: 204 PELRFNISLYRNKAYQPSEVASNTERVDVP-IPLEELLADLGIS 76
           PELRFNISLYRNK YQPSE+AS T+  D+P +PLEELLADL ++
Sbjct: 456 PELRFNISLYRNKEYQPSEMASMTDGEDLPSVPLEELLADLDLT 499