BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00038668
         (246 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAG09097.1|AC009323_8 Putative retroelement polyprotein [Arab...   140   1e-31
dbj|BAB10837.1| retroelement pol polyprotein-like [Arabidopsis t...   135   3e-30
gb|AAB87099.1| putative retroelement pol polyprotein [Arabidopsi...   130   1e-28
gb|AAD19784.1| putative retroelement pol polyprotein [Arabidopsi...   129   2e-28
gb|AAD24600.1| putative retroelement pol polyprotein [Arabidopsi...   129   3e-28

>gb|AAG09097.1|AC009323_8 Putative retroelement polyprotein [Arabidopsis thaliana]
          Length = 1486

 Score =  140 bits (352), Expect = 1e-31
 Identities = 62/81 (76%), Positives = 71/81 (87%)
 Frame = -3

Query: 244 GQEFLCLKDFFAQMGILHQTSCVDTPQQNGRVERKHRHLLNVARALRFQAQLPIDFWGEC 65
           G EF+CL DFFAQ GI+H+TSCV TPQQNGRVERKHRH+LNVARALRFQ+ LPI+FW  C
Sbjct: 632 GSEFICLSDFFAQKGIIHETSCVGTPQQNGRVERKHRHILNVARALRFQSGLPIEFWSYC 691

Query: 64  VVTACHLINRTPTPVLNGKTP 2
            +TA +LINRTPTP+L GKTP
Sbjct: 692 ALTAAYLINRTPTPLLKGKTP 712


>dbj|BAB10837.1| retroelement pol polyprotein-like [Arabidopsis thaliana]
          Length = 1462

 Score =  135 bits (340), Expect = 3e-30
 Identities = 60/81 (74%), Positives = 69/81 (85%)
 Frame = -3

Query: 244 GQEFLCLKDFFAQMGILHQTSCVDTPQQNGRVERKHRHLLNVARALRFQAQLPIDFWGEC 65
           G EF+CL  FF   GI+H+TSCV TPQQNGRVERKHRH+LNVARALRFQA+LPI+FW  C
Sbjct: 596 GTEFVCLSSFFVDHGIIHETSCVGTPQQNGRVERKHRHILNVARALRFQARLPIEFWSYC 655

Query: 64  VVTACHLINRTPTPVLNGKTP 2
            +TA +LINRTPTP+L GKTP
Sbjct: 656 ALTAAYLINRTPTPLLQGKTP 676


>gb|AAB87099.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 1496

 Score =  130 bits (327), Expect = 1e-28
 Identities = 59/81 (72%), Positives = 66/81 (81%)
 Frame = -3

Query: 244 GQEFLCLKDFFAQMGILHQTSCVDTPQQNGRVERKHRHLLNVARALRFQAQLPIDFWGEC 65
           G EF+CL  +F   GILHQTSCVDTPQQNGRVERKHRH+LNVARA  FQ  LP+ FWGE 
Sbjct: 628 GTEFMCLTPYFQTHGILHQTSCVDTPQQNGRVERKHRHILNVARACLFQGNLPVKFWGES 687

Query: 64  VVTACHLINRTPTPVLNGKTP 2
           ++TA HLINRTP+ VL GKTP
Sbjct: 688 ILTATHLINRTPSAVLKGKTP 708


>gb|AAD19784.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 1501

 Score =  129 bits (325), Expect = 2e-28
 Identities = 57/81 (70%), Positives = 69/81 (85%)
 Frame = -3

Query: 244 GQEFLCLKDFFAQMGILHQTSCVDTPQQNGRVERKHRHLLNVARALRFQAQLPIDFWGEC 65
           G EF+CL  +F + GI+HQTSCV TPQQNGRVERKHRH+LNVARAL FQA LPI FWGE 
Sbjct: 655 GTEFMCLSSYFRENGIIHQTSCVGTPQQNGRVERKHRHILNVARALLFQASLPIKFWGES 714

Query: 64  VVTACHLINRTPTPVLNGKTP 2
           ++TA +LINRTP+ +L+G+TP
Sbjct: 715 ILTAAYLINRTPSSILSGRTP 735


>gb|AAD24600.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 1333

 Score =  129 bits (323), Expect = 3e-28
 Identities = 58/81 (71%), Positives = 67/81 (82%)
 Frame = -3

Query: 244 GQEFLCLKDFFAQMGILHQTSCVDTPQQNGRVERKHRHLLNVARALRFQAQLPIDFWGEC 65
           G EFLCL  FF + G++H+ SCV TP++N RVERKHRHLLNVARALRFQA LPI FWGEC
Sbjct: 518 GTEFLCLTKFFQEQGVIHERSCVATPERNDRVERKHRHLLNVARALRFQANLPIQFWGEC 577

Query: 64  VVTACHLINRTPTPVLNGKTP 2
           V+TA +LINRTP+ VLN  TP
Sbjct: 578 VLTAAYLINRTPSSVLNDSTP 598