BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00038608
         (284 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003549147.1| PREDICTED: LOW QUALITY PROTEIN: pentatricope...    67   1e-09
ref|XP_002283117.1| PREDICTED: pentatricopeptide repeat-containi...    61   1e-07
ref|XP_003619639.1| Pentatricopeptide repeat-containing protein ...    60   2e-07
ref|XP_003619637.1| Pentatricopeptide repeat protein [Medicago t...    55   4e-06

>ref|XP_003549147.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At5g66520-like [Glycine max]
          Length = 622

 Score = 67.4 bits (163), Expect = 1e-09
 Identities = 39/93 (41%), Positives = 48/93 (51%)
 Frame = +1

Query: 1   LVSLLESCKTMTQINQIHAQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYAHNVFVQFPC 180
           LVSL++SCK+M QI Q HAQ                             YAH +F Q P 
Sbjct: 19  LVSLIDSCKSMQQIKQTHAQLITTALISHPVSANKLLKLAACASLS---YAHKLFDQIPQ 75

Query: 181 PDIFIYNTMIKAHIPNAHFSPGSLLVFQSAVRD 279
           PD+FIYNTMIKAH  + H    SL+VF+S  +D
Sbjct: 76  PDLFIYNTMIKAHSLSPHSCHNSLIVFRSLTQD 108


>ref|XP_002283117.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
           [Vitis vinifera]
          Length = 624

 Score = 60.8 bits (146), Expect = 1e-07
 Identities = 36/90 (40%), Positives = 41/90 (45%)
 Frame = +1

Query: 13  LESCKTMTQINQIHAQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYAHNVFVQFPCPDIF 192
           LESCK+M QI Q HA                              YAH +F Q P PD+F
Sbjct: 22  LESCKSMNQIKQTHAHLITTGLILHPITANKLLKVLIASSFGSLSYAHQLFDQIPKPDVF 81

Query: 193 IYNTMIKAHIPNAHFSPGSLLVFQSAVRDS 282
           IYNTMIKAH      S  S+ +F S VR S
Sbjct: 82  IYNTMIKAHAVIPTSSHNSMRIFLSMVRVS 111


>ref|XP_003619639.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355494654|gb|AES75857.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 1182

 Score = 60.1 bits (144), Expect = 2e-07
 Identities = 35/94 (37%), Positives = 46/94 (48%)
 Frame = +1

Query: 1   LVSLLESCKTMTQINQIHAQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYAHNVFVQFPC 180
           L SL++ CK++ QI Q HA                              YAH +F Q P 
Sbjct: 182 LSSLIDLCKSINQIKQTHANLITTAQITLPVIANKFLKNVALASLT---YAHKLFDQIPQ 238

Query: 181 PDIFIYNTMIKAHIPNAHFSPGSLLVFQSAVRDS 282
           PD+FIYNTMIK+H  + H    S+ VF+S +RDS
Sbjct: 239 PDLFIYNTMIKSHSMSPHSYLDSIAVFRSLIRDS 272


>ref|XP_003619637.1| Pentatricopeptide repeat protein [Medicago truncatula]
           gi|355494652|gb|AES75855.1| Pentatricopeptide repeat
           protein [Medicago truncatula]
          Length = 188

 Score = 55.5 bits (132), Expect = 4e-06
 Identities = 33/92 (35%), Positives = 44/92 (47%)
 Frame = +1

Query: 7   SLLESCKTMTQINQIHAQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYAHNVFVQFPCPD 186
           SL++ CK++ QI Q HA                              YAH +F + P  D
Sbjct: 15  SLIDLCKSINQIKQTHAHLITTAQISYPVIANKFLKNVALVSLT---YAHKLFDKIPQRD 71

Query: 187 IFIYNTMIKAHIPNAHFSPGSLLVFQSAVRDS 282
           +FIYNTMIKAH  + H    S+ VF+S +RDS
Sbjct: 72  LFIYNTMIKAHSMSNHSYRDSIAVFRSLIRDS 103