BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00038557
         (435 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002298921.1| predicted protein [Populus trichocarpa] gi|2...   116   2e-24
ref|XP_002267684.1| PREDICTED: pentatricopeptide repeat-containi...   113   2e-23
emb|CAN60667.1| hypothetical protein VITISV_028261 [Vitis vinifera]   112   4e-23
ref|NP_188076.1| pentatricopeptide repeat-containing protein [Ar...   102   3e-20
ref|XP_002882884.1| predicted protein [Arabidopsis lyrata subsp....   102   4e-20

>ref|XP_002298921.1| predicted protein [Populus trichocarpa] gi|222846179|gb|EEE83726.1|
           predicted protein [Populus trichocarpa]
          Length = 326

 Score =  116 bits (291), Expect = 2e-24
 Identities = 50/87 (57%), Positives = 74/87 (85%)
 Frame = +1

Query: 175 RLNHKDWLAPNEVLEIFKRLRDSESVINVLEKYSQRKDYYPSEALYTVVVQKLSRAKKYD 354
           +L HKDWL+PNEV++IF+ L+D  S+I+V  +YS+RKDY P+EALYT V+ KL++AK +D
Sbjct: 1   KLTHKDWLSPNEVIKIFENLKDPNSIISVWNQYSKRKDYKPNEALYTQVINKLAQAKNFD 60

Query: 355 AIDDVLKKIKNEKTCMLSDDFFYGVIR 435
           AI+D+++KIK +K+C LS+DFF+ VI+
Sbjct: 61  AIEDIMQKIKLDKSCRLSNDFFHNVIK 87


>ref|XP_002267684.1| PREDICTED: pentatricopeptide repeat-containing protein At3g14580,
           mitochondrial-like [Vitis vinifera]
          Length = 393

 Score =  113 bits (282), Expect = 2e-23
 Identities = 59/121 (48%), Positives = 83/121 (68%), Gaps = 7/121 (5%)
 Frame = +1

Query: 94  LLRKHLVTIYPVLIHRRIITRSNC-------TVSRLNHKDWLAPNEVLEIFKRLRDSESV 252
           LLR +       LIH  +I +S          + RL+HKDWL+P EVL+IF  LR+ ESV
Sbjct: 9   LLRIYRSVSRSALIHPTLIQKSTFFSTFPPDDLKRLDHKDWLSPREVLKIFDGLRNPESV 68

Query: 253 INVLEKYSQRKDYYPSEALYTVVVQKLSRAKKYDAIDDVLKKIKNEKTCMLSDDFFYGVI 432
           + VL+  S+RKD+ P+EALYT+V+ KL++A+ +DAI+DV+K +K +K C LSD FFY VI
Sbjct: 69  MPVLDSVSKRKDFKPNEALYTLVINKLAQARMFDAIEDVIKTLKIDKQCRLSDVFFYNVI 128

Query: 433 R 435
           +
Sbjct: 129 K 129


>emb|CAN60667.1| hypothetical protein VITISV_028261 [Vitis vinifera]
          Length = 393

 Score =  112 bits (279), Expect = 4e-23
 Identities = 56/108 (51%), Positives = 79/108 (73%), Gaps = 2/108 (1%)
 Frame = +1

Query: 118 IYPVLIHRRII--TRSNCTVSRLNHKDWLAPNEVLEIFKRLRDSESVINVLEKYSQRKDY 291
           I+P LI + I   T     + RL+HKDWL+P EVL+IF  LR+ ESV+ VL+   +RKD+
Sbjct: 22  IHPTLIQKSIFFSTFPPDDLKRLDHKDWLSPREVLKIFDGLRNPESVMPVLDSVCKRKDF 81

Query: 292 YPSEALYTVVVQKLSRAKKYDAIDDVLKKIKNEKTCMLSDDFFYGVIR 435
            P+EALYT+V+ KL++A+ +DAI+DV+K +K +K C LSD FFY VI+
Sbjct: 82  KPNEALYTLVINKLAQARMFDAIEDVIKTLKIDKQCRLSDVFFYNVIK 129


>ref|NP_188076.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|75274210|sp|Q9LUD6.1|PP230_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At3g14580, mitochondrial; Flags: Precursor
           gi|9294380|dbj|BAB02390.1| unnamed protein product
           [Arabidopsis thaliana] gi|119935972|gb|ABM06049.1|
           At3g14580 [Arabidopsis thaliana]
           gi|332642020|gb|AEE75541.1| pentatricopeptide
           repeat-containing protein [Arabidopsis thaliana]
          Length = 405

 Score =  102 bits (254), Expect = 3e-20
 Identities = 43/89 (48%), Positives = 66/89 (74%)
 Frame = +1

Query: 169 VSRLNHKDWLAPNEVLEIFKRLRDSESVINVLEKYSQRKDYYPSEALYTVVVQKLSRAKK 348
           ++RL HKDWLAPNEVL+IF  ++D   ++   + YS+RKDY P+E+LY +++ K  +AK 
Sbjct: 51  LARLRHKDWLAPNEVLKIFDNVKDPSFLLPAYQHYSKRKDYQPTESLYALMINKFGQAKM 110

Query: 349 YDAIDDVLKKIKNEKTCMLSDDFFYGVIR 435
           YD I++V++ IK EK C  S++FFY ++R
Sbjct: 111 YDEIEEVMRTIKLEKRCRFSEEFFYNLMR 139


>ref|XP_002882884.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
           gi|297328724|gb|EFH59143.1| predicted protein
           [Arabidopsis lyrata subsp. lyrata]
          Length = 409

 Score =  102 bits (253), Expect = 4e-20
 Identities = 43/89 (48%), Positives = 66/89 (74%)
 Frame = +1

Query: 169 VSRLNHKDWLAPNEVLEIFKRLRDSESVINVLEKYSQRKDYYPSEALYTVVVQKLSRAKK 348
           ++RL HKDWLAPNEVL+IF+ ++D   ++   + YS+RKDY P+E+LY +++ K  +AK 
Sbjct: 51  LARLKHKDWLAPNEVLKIFENVKDPSFLMPAYQHYSKRKDYQPTESLYALLINKFGQAKM 110

Query: 349 YDAIDDVLKKIKNEKTCMLSDDFFYGVIR 435
           +D I++V+  IK EK C  S+DFFY ++R
Sbjct: 111 FDEIEEVMSTIKLEKRCRFSEDFFYNLMR 139