BLASTX nr result
ID: Coptis21_contig00037424
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis21_contig00037424
(254 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_003631789.1| PREDICTED: pentatricopeptide repeat-containi... 110 1e-22
emb|CBI21003.3| unnamed protein product [Vitis vinifera] 110 1e-22
ref|XP_002515553.1| pentatricopeptide repeat-containing protein,... 110 1e-22
ref|XP_002309609.1| predicted protein [Populus trichocarpa] gi|2... 109 2e-22
ref|XP_003607325.1| Pentatricopeptide repeat-containing protein ... 106 2e-21
>ref|XP_003631789.1| PREDICTED: pentatricopeptide repeat-containing protein At3g54980,
mitochondrial-like [Vitis vinifera]
Length = 877
Score = 110 bits (275), Expect = 1e-22
Identities = 52/84 (61%), Positives = 67/84 (79%)
Frame = +2
Query: 2 INGFIKEGSVSTALATYWEMCESGISSSVVTYTSLIDGCCKSNCLDLALMMLGEMKSQGL 181
++GFIKEG++ +ALA Y EMCE G+S +VVTYTSLI+G CKSN +DLAL EM+ +GL
Sbjct: 616 VDGFIKEGNIDSALAVYREMCEFGVSPNVVTYTSLINGFCKSNRIDLALKTRDEMREKGL 675
Query: 182 QVEVAAYYALIDGFCKKGDMRGAQ 253
+++V AY ALIDGFCK+ DM AQ
Sbjct: 676 ELDVTAYSALIDGFCKRRDMESAQ 699
Score = 55.1 bits (131), Expect = 6e-06
Identities = 30/76 (39%), Positives = 39/76 (51%)
Frame = +2
Query: 2 INGFIKEGSVSTALATYWEMCESGISSSVVTYTSLIDGCCKSNCLDLALMMLGEMKSQGL 181
ING K G +S A E G S +TY S++DG K +D AL + EM G+
Sbjct: 581 INGLCKVGQMSEARDKLKNFLEEGFIPSCMTYNSIVDGFIKEGNIDSALAVYREMCEFGV 640
Query: 182 QVEVAAYYALIDGFCK 229
V Y +LI+GFCK
Sbjct: 641 SPNVVTYTSLINGFCK 656
>emb|CBI21003.3| unnamed protein product [Vitis vinifera]
Length = 837
Score = 110 bits (275), Expect = 1e-22
Identities = 52/84 (61%), Positives = 67/84 (79%)
Frame = +2
Query: 2 INGFIKEGSVSTALATYWEMCESGISSSVVTYTSLIDGCCKSNCLDLALMMLGEMKSQGL 181
++GFIKEG++ +ALA Y EMCE G+S +VVTYTSLI+G CKSN +DLAL EM+ +GL
Sbjct: 576 VDGFIKEGNIDSALAVYREMCEFGVSPNVVTYTSLINGFCKSNRIDLALKTRDEMREKGL 635
Query: 182 QVEVAAYYALIDGFCKKGDMRGAQ 253
+++V AY ALIDGFCK+ DM AQ
Sbjct: 636 ELDVTAYSALIDGFCKRRDMESAQ 659
Score = 55.1 bits (131), Expect = 6e-06
Identities = 30/76 (39%), Positives = 39/76 (51%)
Frame = +2
Query: 2 INGFIKEGSVSTALATYWEMCESGISSSVVTYTSLIDGCCKSNCLDLALMMLGEMKSQGL 181
ING K G +S A E G S +TY S++DG K +D AL + EM G+
Sbjct: 541 INGLCKVGQMSEARDKLKNFLEEGFIPSCMTYNSIVDGFIKEGNIDSALAVYREMCEFGV 600
Query: 182 QVEVAAYYALIDGFCK 229
V Y +LI+GFCK
Sbjct: 601 SPNVVTYTSLINGFCK 616
>ref|XP_002515553.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223545497|gb|EEF47002.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 927
Score = 110 bits (275), Expect = 1e-22
Identities = 52/83 (62%), Positives = 69/83 (83%)
Frame = +2
Query: 2 INGFIKEGSVSTALATYWEMCESGISSSVVTYTSLIDGCCKSNCLDLALMMLGEMKSQGL 181
++GFIKEGSVS+AL Y EMCESG+S +V+TYT+LI+G CK+N DLAL M EM+++GL
Sbjct: 600 MDGFIKEGSVSSALTAYREMCESGVSPNVITYTTLINGFCKNNNTDLALKMRNEMRNKGL 659
Query: 182 QVEVAAYYALIDGFCKKGDMRGA 250
++++AAY ALIDGFCKK D+ A
Sbjct: 660 ELDIAAYGALIDGFCKKQDIETA 682
Score = 58.9 bits (141), Expect = 4e-07
Identities = 32/84 (38%), Positives = 46/84 (54%)
Frame = +2
Query: 2 INGFIKEGSVSTALATYWEMCESGISSSVVTYTSLIDGCCKSNCLDLALMMLGEMKSQGL 181
I+G+ ++ AL M GIS + TYT+LIDG K L LAL + EM ++G+
Sbjct: 705 ISGYRNLNNMEAALNLQKRMLGEGISCDLQTYTTLIDGLLKEGRLVLALDLYSEMSAKGI 764
Query: 182 QVEVAAYYALIDGFCKKGDMRGAQ 253
++ Y LI+G C KG + AQ
Sbjct: 765 IPDIIIYTVLINGLCGKGQLENAQ 788
Score = 57.4 bits (137), Expect = 1e-06
Identities = 32/83 (38%), Positives = 45/83 (54%)
Frame = +2
Query: 2 INGFIKEGSVSTALATYWEMCESGISSSVVTYTSLIDGCCKSNCLDLALMMLGEMKSQGL 181
I+G +KEG + AL Y EM GI ++ YT LI+G C L+ A +L EM+ +
Sbjct: 740 IDGLLKEGRLVLALDLYSEMSAKGIIPDIIIYTVLINGLCGKGQLENAQKILAEMERDSI 799
Query: 182 QVEVAAYYALIDGFCKKGDMRGA 250
V Y ALI G K G+++ A
Sbjct: 800 TPNVPIYNALIAGHFKAGNLQEA 822
Score = 55.8 bits (133), Expect = 4e-06
Identities = 27/74 (36%), Positives = 43/74 (58%)
Frame = +2
Query: 17 KEGSVSTALATYWEMCESGISSSVVTYTSLIDGCCKSNCLDLALMMLGEMKSQGLQVEVA 196
KEG +S A + +M + G++ + V+Y S+I G C+ LD+A + +M GL+ V
Sbjct: 465 KEGKMSEATTLWQKMLDKGLAPTKVSYNSMILGHCRQGNLDMAASVFSDMLDCGLKPNVI 524
Query: 197 AYYALIDGFCKKGD 238
Y L+DG+ K GD
Sbjct: 525 TYSILMDGYFKNGD 538
>ref|XP_002309609.1| predicted protein [Populus trichocarpa] gi|222855585|gb|EEE93132.1|
predicted protein [Populus trichocarpa]
Length = 841
Score = 109 bits (273), Expect = 2e-22
Identities = 50/83 (60%), Positives = 69/83 (83%)
Frame = +2
Query: 2 INGFIKEGSVSTALATYWEMCESGISSSVVTYTSLIDGCCKSNCLDLALMMLGEMKSQGL 181
I+GF+KEGSV++ALA Y EMC+ G+S +V TYT+LI+G CKSN +DLAL ++ EMK++G+
Sbjct: 580 IDGFVKEGSVNSALAVYTEMCKIGVSPNVFTYTNLINGFCKSNNMDLALKVMDEMKNKGI 639
Query: 182 QVEVAAYYALIDGFCKKGDMRGA 250
+++V Y ALIDGFC+KGDM A
Sbjct: 640 ELDVTVYCALIDGFCRKGDMVNA 662
Score = 55.5 bits (132), Expect = 5e-06
Identities = 28/74 (37%), Positives = 44/74 (59%)
Frame = +2
Query: 17 KEGSVSTALATYWEMCESGISSSVVTYTSLIDGCCKSNCLDLALMMLGEMKSQGLQVEVA 196
KEG +S A + + +M G+ SVV+Y ++I G C+ +D A + EM +GL+ +
Sbjct: 445 KEGKMSEACSIWEKMVRKGVRPSVVSYNNMILGHCQQGDMDSANGVFVEMLEKGLKPNLI 504
Query: 197 AYYALIDGFCKKGD 238
Y L+DG+ KKGD
Sbjct: 505 TYSVLMDGYFKKGD 518
>ref|XP_003607325.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355508380|gb|AES89522.1| Pentatricopeptide
repeat-containing protein [Medicago truncatula]
Length = 834
Score = 106 bits (264), Expect = 2e-21
Identities = 52/83 (62%), Positives = 63/83 (75%)
Frame = +2
Query: 2 INGFIKEGSVSTALATYWEMCESGISSSVVTYTSLIDGCCKSNCLDLALMMLGEMKSQGL 181
I+GF KEG+V +AL Y EMCESGIS V+TYTSLIDG CKSN + LAL M +MK +G+
Sbjct: 576 IDGFFKEGAVDSALLAYREMCESGISPDVITYTSLIDGLCKSNKIGLALEMHSDMKYKGM 635
Query: 182 QVEVAAYYALIDGFCKKGDMRGA 250
+++V AY ALIDGFCK DM A
Sbjct: 636 KLDVVAYSALIDGFCKMHDMESA 658
Score = 61.2 bits (147), Expect = 8e-08
Identities = 32/76 (42%), Positives = 43/76 (56%)
Frame = +2
Query: 23 GSVSTALATYWEMCESGISSSVVTYTSLIDGCCKSNCLDLALMMLGEMKSQGLQVEVAAY 202
G V+ A + +M GI+ S+V+Y +LI G CK C+D A ML + +GL+ Y
Sbjct: 443 GKVNEACNLWEKMVSKGITPSLVSYNNLILGHCKKGCMDKAYSMLKSILERGLKPNAVTY 502
Query: 203 YALIDGFCKKGDMRGA 250
LIDGF KKGD A
Sbjct: 503 TLLIDGFFKKGDSERA 518
Score = 55.5 bits (132), Expect = 5e-06
Identities = 30/76 (39%), Positives = 39/76 (51%)
Frame = +2
Query: 2 INGFIKEGSVSTALATYWEMCESGISSSVVTYTSLIDGCCKSNCLDLALMMLGEMKSQGL 181
ING K G VS + G S+ +TY S+IDG K +D AL+ EM G+
Sbjct: 541 INGLGKTGRVSETQDKLNNFIKQGFVSTSITYNSIIDGFFKEGAVDSALLAYREMCESGI 600
Query: 182 QVEVAAYYALIDGFCK 229
+V Y +LIDG CK
Sbjct: 601 SPDVITYTSLIDGLCK 616