BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00037392
         (358 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003632994.1| PREDICTED: pentatricopeptide repeat-containi...   194   8e-48
emb|CBI30968.3| unnamed protein product [Vitis vinifera]              194   8e-48
ref|XP_002531058.1| pentatricopeptide repeat-containing protein,...   177   8e-43
ref|XP_003541672.1| PREDICTED: pentatricopeptide repeat-containi...   177   1e-42
ref|XP_004158687.1| PREDICTED: LOW QUALITY PROTEIN: pentatricope...   175   3e-42

>ref|XP_003632994.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Vitis vinifera]
          Length = 613

 Score =  194 bits (492), Expect = 8e-48
 Identities = 96/119 (80%), Positives = 107/119 (89%)
 Frame = +2

Query: 2   RNLVTWNSVINGFSINSRPNEALTLFREMSFEEGVKPDGFTMVSLLTACAELGALALGRR 181
           RNLVTWNSVING+++N RPNEALTLFREM    GV+PDGFTMVSLL+ACAELGALALGRR
Sbjct: 204 RNLVTWNSVINGYALNGRPNEALTLFREMGLR-GVEPDGFTMVSLLSACAELGALALGRR 262

Query: 182 VHVYMAKVGLHDNLHAGNSLIDLYAKCGSIWEAYKVFNEMAVRSVVSWTSLIVGLAVNG 358
            HVYM KVGL  NLHAGN+L+DLYAKCGSI +A+KVF+EM  +SVVSWTSLIVGLAVNG
Sbjct: 263 AHVYMVKVGLDGNLHAGNALLDLYAKCGSIRQAHKVFDEMEEKSVVSWTSLIVGLAVNG 321



 Score = 83.2 bits (204), Expect = 2e-14
 Identities = 44/118 (37%), Positives = 69/118 (58%)
 Frame = +2

Query: 5   NLVTWNSVINGFSINSRPNEALTLFREMSFEEGVKPDGFTMVSLLTACAELGALALGRRV 184
           N+ TWN++I G++ +  P  AL L+R+M     ++PD  T   LL A A+L  +  G +V
Sbjct: 104 NIFTWNTMIRGYAESENPMPALELYRQMHVS-CIEPDTHTYPFLLKAIAKLMDVREGEKV 162

Query: 185 HVYMAKVGLHDNLHAGNSLIDLYAKCGSIWEAYKVFNEMAVRSVVSWTSLIVGLAVNG 358
           H    + G    +   N+L+ +YA CG    A+K+F  MA R++V+W S+I G A+NG
Sbjct: 163 HSIAIRNGFESLVFVQNTLVHMYAACGHAESAHKLFELMAERNLVTWNSVINGYALNG 220


>emb|CBI30968.3| unnamed protein product [Vitis vinifera]
          Length = 1434

 Score =  194 bits (492), Expect = 8e-48
 Identities = 96/119 (80%), Positives = 107/119 (89%)
 Frame = +2

Query: 2   RNLVTWNSVINGFSINSRPNEALTLFREMSFEEGVKPDGFTMVSLLTACAELGALALGRR 181
           RNLVTWNSVING+++N RPNEALTLFREM    GV+PDGFTMVSLL+ACAELGALALGRR
Sbjct: 59  RNLVTWNSVINGYALNGRPNEALTLFREMGLR-GVEPDGFTMVSLLSACAELGALALGRR 117

Query: 182 VHVYMAKVGLHDNLHAGNSLIDLYAKCGSIWEAYKVFNEMAVRSVVSWTSLIVGLAVNG 358
            HVYM KVGL  NLHAGN+L+DLYAKCGSI +A+KVF+EM  +SVVSWTSLIVGLAVNG
Sbjct: 118 AHVYMVKVGLDGNLHAGNALLDLYAKCGSIRQAHKVFDEMEEKSVVSWTSLIVGLAVNG 176


>ref|XP_002531058.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223529353|gb|EEF31319.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 341

 Score =  177 bits (449), Expect = 8e-43
 Identities = 86/119 (72%), Positives = 103/119 (86%)
 Frame = +2

Query: 2   RNLVTWNSVINGFSINSRPNEALTLFREMSFEEGVKPDGFTMVSLLTACAELGALALGRR 181
           R+LV WN+ I+GF++N +PNEAL L+ EM  E GV+PDGFT+VSLL+ACAELGALALGRR
Sbjct: 204 RDLVAWNTAISGFALNGKPNEALKLYMEMGLE-GVEPDGFTLVSLLSACAELGALALGRR 262

Query: 182 VHVYMAKVGLHDNLHAGNSLIDLYAKCGSIWEAYKVFNEMAVRSVVSWTSLIVGLAVNG 358
           +H YM KVGL +NLHA NSLIDLYAKCG I +A +VF+EM +R+VVSWTSLIVGLAVNG
Sbjct: 263 IHAYMVKVGLDENLHANNSLIDLYAKCGRIRDAQQVFDEMELRNVVSWTSLIVGLAVNG 321



 Score = 77.8 bits (190), Expect = 9e-13
 Identities = 38/118 (32%), Positives = 65/118 (55%)
 Frame = +2

Query: 5   NLVTWNSVINGFSINSRPNEALTLFREMSFEEGVKPDGFTMVSLLTACAELGALALGRRV 184
           N+ TWN++I G + +  P  A+ L+  + F   ++PD  T   LL A +++  + +G ++
Sbjct: 104 NIFTWNTMIRGHAESENPKPAIELYHRLHFNS-IEPDTHTYPFLLKAVSKMVNVRVGEKI 162

Query: 185 HVYMAKVGLHDNLHAGNSLIDLYAKCGSIWEAYKVFNEMAVRSVVSWTSLIVGLAVNG 358
           H    + G    +   NSL+ +YA CG    A+K+F  M  R +V+W + I G A+NG
Sbjct: 163 HSISIRNGFESLVFVQNSLMHMYAACGQYESAHKLFEFMPDRDLVAWNTAISGFALNG 220


>ref|XP_003541672.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Glycine max]
          Length = 591

 Score =  177 bits (448), Expect = 1e-42
 Identities = 89/119 (74%), Positives = 103/119 (86%)
 Frame = +2

Query: 2   RNLVTWNSVINGFSINSRPNEALTLFREMSFEEGVKPDGFTMVSLLTACAELGALALGRR 181
           R+LV WNS+INGF++N RPNEALTLFREMS E GV+PDGFT+VSLL+A AELGAL LGRR
Sbjct: 182 RDLVAWNSMINGFALNGRPNEALTLFREMSVE-GVEPDGFTVVSLLSASAELGALELGRR 240

Query: 182 VHVYMAKVGLHDNLHAGNSLIDLYAKCGSIWEAYKVFNEMAVRSVVSWTSLIVGLAVNG 358
           VHVY+ KVGL  N H  NSL+DLYAKCG+I EA +VF+EM+ R+ VSWTSLIVGLAVNG
Sbjct: 241 VHVYLLKVGLSKNSHVTNSLLDLYAKCGAIREAQRVFSEMSERNAVSWTSLIVGLAVNG 299



 Score = 79.0 bits (193), Expect = 4e-13
 Identities = 42/118 (35%), Positives = 64/118 (54%)
 Frame = +2

Query: 5   NLVTWNSVINGFSINSRPNEALTLFREMSFEEGVKPDGFTMVSLLTACAELGALALGRRV 184
           N+ TWN++I G++ +  P+ A   +R+M     V+PD  T   LL A ++   +  G  +
Sbjct: 82  NVFTWNTIIRGYAESDNPSPAFLFYRQMVVS-CVEPDTHTYPFLLKAISKSLNVREGEAI 140

Query: 185 HVYMAKVGLHDNLHAGNSLIDLYAKCGSIWEAYKVFNEMAVRSVVSWTSLIVGLAVNG 358
           H    + G    +   NSL+ +YA CG    AYKVF  M  R +V+W S+I G A+NG
Sbjct: 141 HSVTIRNGFESLVFVQNSLLHIYAACGDTESAYKVFELMKERDLVAWNSMINGFALNG 198



 Score = 62.0 bits (149), Expect = 5e-08
 Identities = 38/121 (31%), Positives = 63/121 (52%), Gaps = 2/121 (1%)
 Frame = +2

Query: 2   RNLVTWNSVINGFSINSRPNEALTLFREMSFEEGVKPDGFTMVSLLTACAELGALALGRR 181
           RN V+W S+I G ++N    EAL LF+EM   +G+ P   T V +L AC+  G L  G  
Sbjct: 283 RNAVSWTSLIVGLAVNGFGEEALELFKEME-GQGLVPSEITFVGVLYACSHCGMLDEGFE 341

Query: 182 VHVYM-AKVGLHDNLHAGNSLIDLYAKCGSIWEAYKVFNEMAVR-SVVSWTSLIVGLAVN 355
               M  + G+   +     ++DL ++ G + +AY+    M V+ + V W +L+    ++
Sbjct: 342 YFRRMKEECGIIPRIEHYGCMVDLLSRAGLVKQAYEYIQNMPVQPNAVIWRTLLGACTIH 401

Query: 356 G 358
           G
Sbjct: 402 G 402


>ref|XP_004158687.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g21065-like [Cucumis sativus]
          Length = 609

 Score =  175 bits (444), Expect = 3e-42
 Identities = 87/119 (73%), Positives = 100/119 (84%)
 Frame = +2

Query: 2   RNLVTWNSVINGFSINSRPNEALTLFREMSFEEGVKPDGFTMVSLLTACAELGALALGRR 181
           R+ V WNSVINGF++N  PNEALTL+REM   EGV+PDGFTMVSLL+AC ELGALALG R
Sbjct: 200 RDRVAWNSVINGFALNGMPNEALTLYREMG-SEGVEPDGFTMVSLLSACVELGALALGER 258

Query: 182 VHVYMAKVGLHDNLHAGNSLIDLYAKCGSIWEAYKVFNEMAVRSVVSWTSLIVGLAVNG 358
           VH+YM KVGL  N HA N+L+DLY+KCG+  +A KVF+EM  RSVVSWTSLIVGLAVNG
Sbjct: 259 VHMYMVKVGLVQNQHASNALLDLYSKCGNFRDAQKVFDEMEERSVVSWTSLIVGLAVNG 317



 Score = 85.9 bits (211), Expect = 3e-15
 Identities = 43/118 (36%), Positives = 67/118 (56%)
 Frame = +2

Query: 5   NLVTWNSVINGFSINSRPNEALTLFREMSFEEGVKPDGFTMVSLLTACAELGALALGRRV 184
           N+ TWN++I GF+ +  P+ A+ LF +M     + PD  T   L  A A+L  ++LG  +
Sbjct: 99  NIFTWNTMIRGFAESENPSPAVELFSQMHAASSILPDTHTFPFLFKAVAKLMDVSLGEGI 158

Query: 185 HVYMAKVGLHDNLHAGNSLIDLYAKCGSIWEAYKVFNEMAVRSVVSWTSLIVGLAVNG 358
           H  + + G        NSL+ +Y+  GS+  AY+VF  M+ R  V+W S+I G A+NG
Sbjct: 159 HSVVVRNGFDSLRFVQNSLVHMYSVLGSLXSAYQVFEIMSYRDRVAWNSVINGFALNG 216



 Score = 63.5 bits (153), Expect = 2e-08
 Identities = 38/121 (31%), Positives = 62/121 (51%), Gaps = 2/121 (1%)
 Frame = +2

Query: 2   RNLVTWNSVINGFSINSRPNEALTLFREMSFEEGVKPDGFTMVSLLTACAELGALALGRR 181
           R++V+W S+I G ++N   NEAL LF E+   +G+KP   T V +L AC+  G L  G  
Sbjct: 301 RSVVSWTSLIVGLAVNGLGNEALKLFGELE-RQGLKPSEITFVGVLYACSHCGMLDEGFN 359

Query: 182 VHVYM-AKVGLHDNLHAGNSLIDLYAKCGSIWEAYKVFNEMAV-RSVVSWTSLIVGLAVN 355
               M  + G+   +     ++DL  + G + +AY     M V  + V W +L+    ++
Sbjct: 360 YFRRMKEEYGILPRIEHHGCMVDLLCRAGKVGDAYDYIRNMPVPPNAVIWRTLLGACTIH 419

Query: 356 G 358
           G
Sbjct: 420 G 420