BLASTX nr result
ID: Coptis21_contig00037368
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis21_contig00037368
(388 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002280968.2| PREDICTED: pentatricopeptide repeat-containi... 189 2e-46
ref|XP_002510452.1| pentatricopeptide repeat-containing protein,... 175 3e-42
ref|XP_004168675.1| PREDICTED: pentatricopeptide repeat-containi... 167 8e-40
ref|XP_004152769.1| PREDICTED: pentatricopeptide repeat-containi... 167 8e-40
ref|XP_003544296.1| PREDICTED: pentatricopeptide repeat-containi... 167 8e-40
>ref|XP_002280968.2| PREDICTED: pentatricopeptide repeat-containing protein
At1g19720-like [Vitis vinifera]
Length = 1545
Score = 189 bits (480), Expect = 2e-46
Identities = 87/128 (67%), Positives = 110/128 (85%)
Frame = +2
Query: 2 GKLSAARRFFEELDTKDTVTWNSIISGYCRRGKNEEALRLFDRMRAEGVEPGVITWNILI 181
G+LS ARRFFE +D +D V+WNSII+GYC++G+ E++ +LF++M+ EG+EPG++TWNILI
Sbjct: 234 GRLSCARRFFENMDYRDRVSWNSIITGYCQKGELEKSHQLFEKMQEEGIEPGLVTWNILI 293
Query: 182 TSYNQMGNSDVALELMKKMESYGIAPDVFTWTSMISGCAQNKRTSQALELFREMVLAGVE 361
SY+Q G D A+ELMKKMES+ I PDVFTWTSMISG AQN R SQALELFREM+LAG+E
Sbjct: 294 NSYSQSGKCDDAMELMKKMESFRIVPDVFTWTSMISGFAQNNRRSQALELFREMLLAGIE 353
Query: 362 PNGVTIAS 385
PNGVT+ S
Sbjct: 354 PNGVTVTS 361
Score = 106 bits (265), Expect = 2e-21
Identities = 55/129 (42%), Positives = 78/129 (60%), Gaps = 1/129 (0%)
Frame = +2
Query: 2 GKLSAARRFFEELDTKDTVTWNSIISGYCRRGKNEEALRLFDRMRAEGVEPGVITWNILI 181
G+L ARR F+ + KD TWNS+I GYC+ G +A LF +M V P V+TWN +I
Sbjct: 405 GELEDARRVFDMILKKDVYTWNSMIGGYCQAGYCGKAYDLFIKMHESDVPPNVVTWNAMI 464
Query: 182 TSYNQMGNSDVALELMKKMESYG-IAPDVFTWTSMISGCAQNKRTSQALELFREMVLAGV 358
+ Y Q G+ D A++L +ME G I D +W S+I+G QN ++AL +FR+M +
Sbjct: 465 SGYIQNGDEDQAMDLFHRMEKDGLIKRDTASWNSLIAGYLQNGHKNKALGIFRQMQSFCI 524
Query: 359 EPNGVTIAS 385
PN VT+ S
Sbjct: 525 RPNSVTMLS 533
Score = 65.9 bits (159), Expect = 3e-09
Identities = 35/117 (29%), Positives = 65/117 (55%), Gaps = 1/117 (0%)
Frame = +2
Query: 2 GKLSAARRFFEELDTKDTVTWNSIISGYCRRGKNEEALRLFDRMRAEGVEPGVITWNILI 181
G + A+ F+ + +KD ++WNS+I+GY G ++ AL LFD+M GV+P T+ +I
Sbjct: 577 GNIVYAQTIFQGISSKDIISWNSLIAGYVLHGCSDSALDLFDQMTKMGVKPSRGTFLSII 636
Query: 182 TSYNQMGNSDVALELMKK-MESYGIAPDVFTWTSMISGCAQNKRTSQALELFREMVL 349
+++ G D ++ ME Y I P + ++MI ++ + +A+E +M +
Sbjct: 637 YAFSLSGMVDKGKQVFSSMMEDYQILPGLEHHSAMIDLLGRSGKLGEAIEFIEDMAI 693
>ref|XP_002510452.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223551153|gb|EEF52639.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 1218
Score = 175 bits (444), Expect = 3e-42
Identities = 82/129 (63%), Positives = 102/129 (79%)
Frame = +2
Query: 2 GKLSAARRFFEELDTKDTVTWNSIISGYCRRGKNEEALRLFDRMRAEGVEPGVITWNILI 181
GKLS A + FE +D +T WN++ISGYC+ G+ EEA RLFD MR EG+EPG+++WNILI
Sbjct: 223 GKLSLASKCFEMMDKSETAAWNALISGYCQHGQIEEAQRLFDAMREEGIEPGLVSWNILI 282
Query: 182 TSYNQMGNSDVALELMKKMESYGIAPDVFTWTSMISGCAQNKRTSQALELFREMVLAGVE 361
YNQ+G D+A+ELMKKME G +PDV TWTSMISG AQN + S+AL LF +M+LA VE
Sbjct: 283 AGYNQLGYFDIAMELMKKMEVLGTSPDVVTWTSMISGLAQNDKASKALHLFNDMILARVE 342
Query: 362 PNGVTIASA 388
PNGVTI+SA
Sbjct: 343 PNGVTISSA 351
Score = 96.7 bits (239), Expect = 2e-18
Identities = 52/129 (40%), Positives = 74/129 (57%), Gaps = 1/129 (0%)
Frame = +2
Query: 2 GKLSAARRFFEELDTKDTVTWNSIISGYCRRGKNEEALRLFDRMRAEGVEPGVITWNILI 181
GKL A + F+ + KD TWNS+I GYC+ G +A LF +M+ +P ITWN +I
Sbjct: 394 GKLENAWKVFDMMPEKDVYTWNSMIGGYCQVGYCGKAHMLFMKMQKSETQPNAITWNNMI 453
Query: 182 TSYNQMGNSDVALELMKKMESYG-IAPDVFTWTSMISGCAQNKRTSQALELFREMVLAGV 358
Y G+ D A++L ++ME G I D +W S+ISG Q + +AL +FR+M +
Sbjct: 454 WGYIHNGDEDQAMDLFRRMEEDGKIKRDTASWNSLISGYLQIGQKDKALSIFRQMQSFSI 513
Query: 359 EPNGVTIAS 385
N VTI S
Sbjct: 514 NINSVTILS 522
Score = 65.5 bits (158), Expect = 4e-09
Identities = 34/104 (32%), Positives = 57/104 (54%), Gaps = 5/104 (4%)
Frame = +2
Query: 2 GKLSAARRFFEELDTKDT----VTWNSIISGYCRRGKNEEALRLFDRMRAEG-VEPGVIT 166
G A F ++ +T +TWN++I GY G ++A+ LF RM +G ++ +
Sbjct: 425 GYCGKAHMLFMKMQKSETQPNAITWNNMIWGYIHNGDEDQAMDLFRRMEEDGKIKRDTAS 484
Query: 167 WNILITSYNQMGNSDVALELMKKMESYGIAPDVFTWTSMISGCA 298
WN LI+ Y Q+G D AL + ++M+S+ I + T S++ CA
Sbjct: 485 WNSLISGYLQIGQKDKALSIFRQMQSFSININSVTILSVLPACA 528
Score = 61.2 bits (147), Expect = 8e-08
Identities = 36/122 (29%), Positives = 60/122 (49%), Gaps = 4/122 (3%)
Frame = +2
Query: 2 GKLSAARRFFEELDTKDT----VTWNSIISGYCRRGKNEEALRLFDRMRAEGVEPGVITW 169
G++ A+R F+ + + V+WN +I+GY + G + A+ L +M G P V+TW
Sbjct: 254 GQIEEAQRLFDAMREEGIEPGLVSWNILIAGYNQLGYFDIAMELMKKMEVLGTSPDVVTW 313
Query: 170 NILITSYNQMGNSDVALELMKKMESYGIAPDVFTWTSMISGCAQNKRTSQALELFREMVL 349
+I+ Q + AL L M + P+ T +S +S CA K ++ LE+ V
Sbjct: 314 TSMISGLAQNDKASKALHLFNDMILARVEPNGVTISSAVSACASLKVLNEGLEIHALAVK 373
Query: 350 AG 355
G
Sbjct: 374 LG 375
>ref|XP_004168675.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g19720-like, partial [Cucumis sativus]
Length = 1090
Score = 167 bits (423), Expect = 8e-40
Identities = 75/129 (58%), Positives = 105/129 (81%)
Frame = +2
Query: 2 GKLSAARRFFEELDTKDTVTWNSIISGYCRRGKNEEALRLFDRMRAEGVEPGVITWNILI 181
GKLS AR+FF +D +D V+WN +I+GYC++G +EA RL D M +G +PG++T+NI+I
Sbjct: 229 GKLSLARKFFGNMDERDGVSWNVMIAGYCQKGNGDEARRLLDTMSNQGFKPGLVTYNIMI 288
Query: 182 TSYNQMGNSDVALELMKKMESYGIAPDVFTWTSMISGCAQNKRTSQALELFREMVLAGVE 361
SY+Q+G+ D+ ++L KKMES G+APDV+TWTSMISG +Q+ R SQAL+ F++M+LAGVE
Sbjct: 289 ASYSQLGDCDLVIDLKKKMESVGLAPDVYTWTSMISGFSQSSRISQALDFFKKMILAGVE 348
Query: 362 PNGVTIASA 388
PN +TIASA
Sbjct: 349 PNTITIASA 357
Score = 102 bits (255), Expect = 2e-20
Identities = 54/129 (41%), Positives = 76/129 (58%), Gaps = 1/129 (0%)
Frame = +2
Query: 2 GKLSAARRFFEELDTKDTVTWNSIISGYCRRGKNEEALRLFDRMRAEGVEPGVITWNILI 181
GKL AAR F+ + KD TWNS+I GYC+ G +A LF R+R V P V+TWN +I
Sbjct: 400 GKLEAARHVFDTILEKDVYTWNSMIGGYCQAGYGGKAYELFMRLRESTVMPNVVTWNAMI 459
Query: 182 TSYNQMGNSDVALELMKKME-SYGIAPDVFTWTSMISGCAQNKRTSQALELFREMVLAGV 358
+ Q G+ D A++L + ME G+ + +W S+I+G Q ++AL +FR+M
Sbjct: 460 SGCIQNGDEDQAMDLFQIMEKDGGVKRNTASWNSLIAGYHQLGEKNKALAIFRQMQSLNF 519
Query: 359 EPNGVTIAS 385
PN VTI S
Sbjct: 520 SPNSVTILS 528
Score = 64.3 bits (155), Expect = 1e-08
Identities = 35/115 (30%), Positives = 60/115 (52%), Gaps = 1/115 (0%)
Frame = +2
Query: 2 GKLSAARRFFEELDTKDTVTWNSIISGYCRRGKNEEALRLFDRMRAEGVEPGVITWNILI 181
G + +R F + +KD +TWNSII+GY G ++ A +LFD+MR G+ P T +I
Sbjct: 572 GNIKYSRTVFNGMSSKDIITWNSIIAGYILHGCSDSAFQLFDQMRNLGIRPNRGTLASII 631
Query: 182 TSYNQMGNSDVALELMKKM-ESYGIAPDVFTWTSMISGCAQNKRTSQALELFREM 343
+Y G D + + E + I P + + +M+ ++ R + A+E +M
Sbjct: 632 HAYGIAGMVDKGRHVFSSITEEHQILPTLDHYLAMVDLYGRSGRLADAIEFIEDM 686
>ref|XP_004152769.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g19720-like [Cucumis sativus]
Length = 1463
Score = 167 bits (423), Expect = 8e-40
Identities = 75/129 (58%), Positives = 105/129 (81%)
Frame = +2
Query: 2 GKLSAARRFFEELDTKDTVTWNSIISGYCRRGKNEEALRLFDRMRAEGVEPGVITWNILI 181
GKLS AR+FF +D +D V+WN +I+GYC++G +EA RL D M +G +PG++T+NI+I
Sbjct: 229 GKLSLARKFFGNMDERDGVSWNVMIAGYCQKGNGDEARRLLDTMSNQGFKPGLVTYNIMI 288
Query: 182 TSYNQMGNSDVALELMKKMESYGIAPDVFTWTSMISGCAQNKRTSQALELFREMVLAGVE 361
SY+Q+G+ D+ ++L KKMES G+APDV+TWTSMISG +Q+ R SQAL+ F++M+LAGVE
Sbjct: 289 ASYSQLGDCDLVIDLKKKMESVGLAPDVYTWTSMISGFSQSSRISQALDFFKKMILAGVE 348
Query: 362 PNGVTIASA 388
PN +TIASA
Sbjct: 349 PNTITIASA 357
Score = 102 bits (255), Expect = 2e-20
Identities = 54/129 (41%), Positives = 76/129 (58%), Gaps = 1/129 (0%)
Frame = +2
Query: 2 GKLSAARRFFEELDTKDTVTWNSIISGYCRRGKNEEALRLFDRMRAEGVEPGVITWNILI 181
GKL AAR F+ + KD TWNS+I GYC+ G +A LF R+R V P V+TWN +I
Sbjct: 400 GKLEAARHVFDTILEKDVYTWNSMIGGYCQAGYGGKAYELFMRLRESTVMPNVVTWNAMI 459
Query: 182 TSYNQMGNSDVALELMKKME-SYGIAPDVFTWTSMISGCAQNKRTSQALELFREMVLAGV 358
+ Q G+ D A++L + ME G+ + +W S+I+G Q ++AL +FR+M
Sbjct: 460 SGCIQNGDEDQAMDLFQIMEKDGGVKRNTASWNSLIAGYHQLGEKNKALAIFRQMQSLNF 519
Query: 359 EPNGVTIAS 385
PN VTI S
Sbjct: 520 SPNSVTILS 528
Score = 64.3 bits (155), Expect = 1e-08
Identities = 35/115 (30%), Positives = 60/115 (52%), Gaps = 1/115 (0%)
Frame = +2
Query: 2 GKLSAARRFFEELDTKDTVTWNSIISGYCRRGKNEEALRLFDRMRAEGVEPGVITWNILI 181
G + +R F + +KD +TWNSII+GY G ++ A +LFD+MR G+ P T +I
Sbjct: 572 GNIKYSRTVFNGMSSKDIITWNSIIAGYILHGCSDSAFQLFDQMRNLGIRPNRGTLASII 631
Query: 182 TSYNQMGNSDVALELMKKM-ESYGIAPDVFTWTSMISGCAQNKRTSQALELFREM 343
+Y G D + + E + I P + + +M+ ++ R + A+E +M
Sbjct: 632 HAYGIAGMVDKGRHVFSSITEEHQILPTLDHYLAMVDLYGRSGRLADAIEFIEDM 686
>ref|XP_003544296.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g19720-like [Glycine max]
Length = 945
Score = 167 bits (423), Expect = 8e-40
Identities = 72/129 (55%), Positives = 104/129 (80%)
Frame = +2
Query: 2 GKLSAARRFFEELDTKDTVTWNSIISGYCRRGKNEEALRLFDRMRAEGVEPGVITWNILI 181
G++S A + F +D ++ V+WN II+GYC+RG+ E+A + FD M+ EG+EPG++TWNILI
Sbjct: 233 GEMSCAEKIFRRMDERNCVSWNVIITGYCQRGEIEQAQKYFDAMQEEGMEPGLVTWNILI 292
Query: 182 TSYNQMGNSDVALELMKKMESYGIAPDVFTWTSMISGCAQNKRTSQALELFREMVLAGVE 361
SY+Q+G+ D+A++LM+KMES+GI PDV+TWTSMISG Q R ++A +L R+M++ GVE
Sbjct: 293 ASYSQLGHCDIAMDLMRKMESFGITPDVYTWTSMISGFTQKGRINEAFDLLRDMLIVGVE 352
Query: 362 PNGVTIASA 388
PN +TIASA
Sbjct: 353 PNSITIASA 361
Score = 108 bits (269), Expect = 6e-22
Identities = 53/127 (41%), Positives = 81/127 (63%), Gaps = 1/127 (0%)
Frame = +2
Query: 2 GKLSAARRFFEELDTKDTVTWNSIISGYCRRGKNEEALRLFDRMRAEGVEPGVITWNILI 181
G L AA+ F+ + +D +WNSII GYC+ G +A LF +M+ P V+TWN++I
Sbjct: 404 GDLEAAQSIFDVMLERDVYSWNSIIGGYCQAGFCGKAHELFMKMQESDSPPNVVTWNVMI 463
Query: 182 TSYNQMGNSDVALELMKKMESYG-IAPDVFTWTSMISGCAQNKRTSQALELFREMVLAGV 358
T + Q G+ D AL L ++E G I P+V +W S+ISG QN++ +AL++FR+M + +
Sbjct: 464 TGFMQNGDEDEALNLFLRIEKDGKIKPNVASWNSLISGFLQNRQKDKALQIFRQMQFSNM 523
Query: 359 EPNGVTI 379
PN VT+
Sbjct: 524 APNLVTV 530
Score = 72.4 bits (176), Expect = 4e-11
Identities = 40/123 (32%), Positives = 69/123 (56%), Gaps = 1/123 (0%)
Frame = +2
Query: 2 GKLSAARRFFEELDTKDTVTWNSIISGYCRRGKNEEALRLFDRMRAEGVEPGVITWNILI 181
G + +R+ F+ L KD ++WNS++SGY G +E AL LFD+MR +G+ P +T +I
Sbjct: 576 GNIMYSRKVFDGLSPKDIISWNSLLSGYVLHGCSESALDLFDQMRKDGLHPSRVTLTSII 635
Query: 182 TSYNQMGNSDVALELMKKM-ESYGIAPDVFTWTSMISGCAQNKRTSQALELFREMVLAGV 358
++Y+ D + E Y I D+ +++M+ ++ + ++ALE + M V
Sbjct: 636 SAYSHAEMVDEGKHAFSNISEEYQIRLDLEHYSAMVYLLGRSGKLAKALEFIQNM---PV 692
Query: 359 EPN 367
EPN
Sbjct: 693 EPN 695
Score = 67.0 bits (162), Expect = 1e-09
Identities = 34/114 (29%), Positives = 60/114 (52%), Gaps = 4/114 (3%)
Frame = +2
Query: 2 GKLSAARRFFEELDTKDT----VTWNSIISGYCRRGKNEEALRLFDRMRAEGVEPGVITW 169
G++ A+++F+ + + VTWN +I+ Y + G + A+ L +M + G+ P V TW
Sbjct: 264 GEIEQAQKYFDAMQEEGMEPGLVTWNILIASYSQLGHCDIAMDLMRKMESFGITPDVYTW 323
Query: 170 NILITSYNQMGNSDVALELMKKMESYGIAPDVFTWTSMISGCAQNKRTSQALEL 331
+I+ + Q G + A +L++ M G+ P+ T S S CA K S E+
Sbjct: 324 TSMISGFTQKGRINEAFDLLRDMLIVGVEPNSITIASAASACASVKSLSMGSEI 377
Score = 65.1 bits (157), Expect = 6e-09
Identities = 33/103 (32%), Positives = 59/103 (57%), Gaps = 5/103 (4%)
Frame = +2
Query: 2 GKLSAARRFFEELDTKDT----VTWNSIISGYCRRGKNEEALRLFDRMRAEG-VEPGVIT 166
G A F ++ D+ VTWN +I+G+ + G +EAL LF R+ +G ++P V +
Sbjct: 435 GFCGKAHELFMKMQESDSPPNVVTWNVMITGFMQNGDEDEALNLFLRIEKDGKIKPNVAS 494
Query: 167 WNILITSYNQMGNSDVALELMKKMESYGIAPDVFTWTSMISGC 295
WN LI+ + Q D AL++ ++M+ +AP++ T +++ C
Sbjct: 495 WNSLISGFLQNRQKDKALQIFRQMQFSNMAPNLVTVLTILPAC 537