BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00037358
         (323 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002522932.1| conserved hypothetical protein [Ricinus comm...    87   1e-15
gb|ABD28670.2| RNA-directed DNA polymerase (Reverse transcriptas...    84   1e-14
gb|ABD32279.2| reverse transcriptase, putative [Medicago truncat...    81   8e-14
gb|ABN09154.1| RNA-directed DNA polymerase (Reverse transcriptas...    81   1e-13
dbj|BAE79384.1| unnamed protein product [Ipomoea batatas]              79   4e-13

>ref|XP_002522932.1| conserved hypothetical protein [Ricinus communis]
           gi|223537826|gb|EEF39443.1| conserved hypothetical
           protein [Ricinus communis]
          Length = 303

 Score = 87.0 bits (214), Expect = 1e-15
 Identities = 38/107 (35%), Positives = 68/107 (63%)
 Frame = -1

Query: 323 VYNMSVCKWPSRCIKEGEAAVRNFIWSGDPTKRKGVTLKWENVCKPRDEGGLGLRKLRDI 144
           ++   + +WPS  +K  E A+RNF+W+G  + +K VT+KW + CKP  EGG+GL++L  +
Sbjct: 189 LHTFMMYRWPSSLLKSIEKAIRNFLWTGSVSYKKLVTVKWGHCCKPISEGGIGLKRLDVL 248

Query: 143 NLSLLMKLGWQLFTLDTDWSCFMRKKYKMLNGNWLTYHKTSTVWPGI 3
           N ++L ++ W+ ++ D+    F+R +Y + +G      ++S VWP I
Sbjct: 249 NRTMLCRIAWKFYSNDSFVYRFLRSRYLVASG----VPRSSLVWPSI 291


>gb|ABD28670.2| RNA-directed DNA polymerase (Reverse transcriptase) [Medicago
           truncatula]
          Length = 642

 Score = 84.0 bits (206), Expect = 1e-14
 Identities = 36/87 (41%), Positives = 54/87 (62%)
 Frame = -1

Query: 323 VYNMSVCKWPSRCIKEGEAAVRNFIWSGDPTKRKGVTLKWENVCKPRDEGGLGLRKLRDI 144
           V+ MS+  WP + +KE E  ++NFIWSGD TKRK VT+ W  +C   +EGGLG++ L  +
Sbjct: 548 VHTMSIYSWPIKILKEMEKWIKNFIWSGDVTKRKMVTVAWRKICADYEEGGLGVKSLICL 607

Query: 143 NLSLLMKLGWQLFTLDTDWSCFMRKKY 63
           N +  +K+ W L   D  W+  +R  +
Sbjct: 608 NEATNLKICWNLMQSDEQWANIIRNSW 634


>gb|ABD32279.2| reverse transcriptase, putative [Medicago truncatula]
          Length = 480

 Score = 81.3 bits (199), Expect = 8e-14
 Identities = 37/107 (34%), Positives = 63/107 (58%)
 Frame = -1

Query: 323 VYNMSVCKWPSRCIKEGEAAVRNFIWSGDPTKRKGVTLKWENVCKPRDEGGLGLRKLRDI 144
           VY+  +  WP R + + ++ ++NFIWSGD    K  T+ W+ +C+P   GGL ++    I
Sbjct: 276 VYSFQIYMWPRRLLHQLDSWIKNFIWSGDIYTHKVCTVSWKVMCRPWAAGGLDIKPTCLI 335

Query: 143 NLSLLMKLGWQLFTLDTDWSCFMRKKYKMLNGNWLTYHKTSTVWPGI 3
           N SL++ L WQ  T D+ W+  M  ++ + +G  L ++  S++W GI
Sbjct: 336 NESLILLLAWQFSTADSQWAALMHHRF-LKHGTPLQHYFLSSMWGGI 381


>gb|ABN09154.1| RNA-directed DNA polymerase (Reverse transcriptase) [Medicago
           truncatula]
          Length = 528

 Score = 80.9 bits (198), Expect = 1e-13
 Identities = 34/72 (47%), Positives = 50/72 (69%)
 Frame = -1

Query: 323 VYNMSVCKWPSRCIKEGEAAVRNFIWSGDPTKRKGVTLKWENVCKPRDEGGLGLRKLRDI 144
           ++ +++  WPS  +KE E   RNFIWSGD TKRK VT+ W+ +CKP+ +GGLG+R L  +
Sbjct: 454 IHTITIYDWPSFLLKELETCFRNFIWSGDITKRKLVTVAWKKLCKPQSQGGLGIRSLSQL 513

Query: 143 NLSLLMKLGWQL 108
           N +  +KL W +
Sbjct: 514 NAAGNLKLCWDM 525


>dbj|BAE79384.1| unnamed protein product [Ipomoea batatas]
          Length = 1898

 Score = 79.0 bits (193), Expect = 4e-13
 Identities = 37/87 (42%), Positives = 50/87 (57%), Gaps = 1/87 (1%)
 Frame = -1

Query: 320  YNMSVCKWPSRCIKEGEAAVRNFIWSGDPTKRKGVTLKWENVCKPRDEGGLGLRKLRDIN 141
            Y M V   P     E +   RNF+W  D   RK  ++ W  +CKPR+EGGLGLR  RD N
Sbjct: 1339 YTMQVMALPVSTCNEIDKTCRNFLWGHDTNTRKLHSVNWAEICKPRNEGGLGLRMARDFN 1398

Query: 140  LSLLMKLGWQLFT-LDTDWSCFMRKKY 63
             + L K+ WQ+F+ +D  W   +R+KY
Sbjct: 1399 RAFLTKMAWQIFSNIDKLWVKVLREKY 1425