BLASTX nr result
ID: Coptis21_contig00037267
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis21_contig00037267
(334 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002267472.1| PREDICTED: pentatricopeptide repeat-containi... 144 1e-32
ref|XP_002530468.1| pentatricopeptide repeat-containing protein,... 132 2e-29
ref|XP_003581008.1| PREDICTED: pentatricopeptide repeat-containi... 124 8e-27
ref|NP_001172804.1| Os02g0151000 [Oryza sativa Japonica Group] g... 123 2e-26
gb|EEE56309.1| hypothetical protein OsJ_05395 [Oryza sativa Japo... 123 2e-26
>ref|XP_002267472.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Vitis vinifera]
Length = 1058
Score = 144 bits (362), Expect = 1e-32
Identities = 71/111 (63%), Positives = 88/111 (79%)
Frame = +1
Query: 1 EMPERNVASWNTLLTGYSHCGQMDEACWLFEQMRERDLVSWMVMISGYVHIDEYDKGWKL 180
EMPE+NVASWN+++TGY HC +M EA LF+QM ER+ VSWMVMISGYVHI +Y + W +
Sbjct: 289 EMPEKNVASWNSVVTGYCHCYRMSEARELFDQMPERNSVSWMVMISGYVHISDYWEAWDV 348
Query: 181 FLRMHYNGLLPDQSIFVVTLSAITGLNDPFLIGTLRTLSIKTSYEENVVVG 333
F++M PDQSIFVV LSAITGL+D LIG+LR ++IKT YE +VVVG
Sbjct: 349 FVKMCRTVARPDQSIFVVVLSAITGLDDLELIGSLRPIAIKTGYEGDVVVG 399
Score = 71.6 bits (174), Expect = 6e-11
Identities = 36/110 (32%), Positives = 61/110 (55%)
Frame = +1
Query: 1 EMPERNVASWNTLLTGYSHCGQMDEACWLFEQMRERDLVSWMVMISGYVHIDEYDKGWKL 180
E+ NV +WN ++ GY+ G + EA LF++M ++ SW MI+G+V +E + +L
Sbjct: 483 EILNPNVVAWNAIIAGYTQNGMLKEAKDLFQKMPVKNSASWAAMIAGFVQNEESREALEL 542
Query: 181 FLRMHYNGLLPDQSIFVVTLSAITGLNDPFLIGTLRTLSIKTSYEENVVV 330
+ +H +G +P S F LSA + D + + +L+IKT + N V
Sbjct: 543 LIELHRSGSVPSDSSFTSALSACANIGDVEIGRVIHSLAIKTGCQFNSYV 592
Score = 60.5 bits (145), Expect = 1e-07
Identities = 36/107 (33%), Positives = 54/107 (50%)
Frame = +1
Query: 13 RNVASWNTLLTGYSHCGQMDEACWLFEQMRERDLVSWMVMISGYVHIDEYDKGWKLFLRM 192
++ SWN+L++G S +D+A +FE+M +RD+VSW +IS YV + LFL M
Sbjct: 619 KDTVSWNSLISGLSENYMLDDARVVFEKMPKRDVVSWTAIISAYVQAGHGEVALDLFLDM 678
Query: 193 HYNGLLPDQSIFVVTLSAITGLNDPFLIGTLRTLSIKTSYEENVVVG 333
G+ P+Q LSA L L L K ++ + VG
Sbjct: 679 LARGIKPNQLTVTSLLSACGNLGAIKLGEQFHALIFKLGFDTFLFVG 725
Score = 58.5 bits (140), Expect = 5e-07
Identities = 28/60 (46%), Positives = 39/60 (65%)
Frame = +1
Query: 13 RNVASWNTLLTGYSHCGQMDEACWLFEQMRERDLVSWMVMISGYVHIDEYDKGWKLFLRM 192
+N+ +W LLTGY+ G+++EA +FE M ER++VSW MISGYV + KLF M
Sbjct: 231 KNIRTWTILLTGYAKEGRIEEAREVFESMTERNVVSWNAMISGYVQNGDLKNARKLFDEM 290
>ref|XP_002530468.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223530013|gb|EEF31938.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 801
Score = 132 bits (333), Expect = 2e-29
Identities = 65/110 (59%), Positives = 82/110 (74%)
Frame = +1
Query: 1 EMPERNVASWNTLLTGYSHCGQMDEACWLFEQMRERDLVSWMVMISGYVHIDEYDKGWKL 180
EMPERNV+SWN+++TGY G M EA LF++M ER VSWMVM SGYV I +Y +GW +
Sbjct: 146 EMPERNVSSWNSIITGYCKSGLMKEARELFDRMEERSSVSWMVMASGYVEISQYREGWCV 205
Query: 181 FLRMHYNGLLPDQSIFVVTLSAITGLNDPFLIGTLRTLSIKTSYEENVVV 330
FL M +G+ PDQ++FVV LSAI G ND +IG+ RTL +K YEE+VVV
Sbjct: 206 FLMMMNSGVRPDQAVFVVGLSAIMGFNDLGMIGSFRTLVMKMGYEEDVVV 255
Score = 77.8 bits (190), Expect = 8e-13
Identities = 41/111 (36%), Positives = 59/111 (53%)
Frame = +1
Query: 1 EMPERNVASWNTLLTGYSHCGQMDEACWLFEQMRERDLVSWMVMISGYVHIDEYDKGWKL 180
E+ NV +WN +L GY+ G ++EA +F QM R+ VSW MI G+V +G KL
Sbjct: 340 EIVNPNVVAWNAMLGGYAQNGMLEEAKAIFLQMPVRNAVSWAAMIGGFVQNGNGKEGLKL 399
Query: 181 FLRMHYNGLLPDQSIFVVTLSAITGLNDPFLIGTLRTLSIKTSYEENVVVG 333
F +H G++P S F L A + D + + +LSIK + N VG
Sbjct: 400 FTELHRTGMIPTHSCFTSALFACANIGDVEIGKQIHSLSIKMRCQSNPFVG 450
Score = 60.1 bits (144), Expect = 2e-07
Identities = 33/85 (38%), Positives = 47/85 (55%)
Frame = +1
Query: 4 MPERNVASWNTLLTGYSHCGQMDEACWLFEQMRERDLVSWMVMISGYVHIDEYDKGWKLF 183
M R+ SWN+L++G S +++A F+ M RD VSW +IS +VH D+ + W+LF
Sbjct: 473 MNVRDTVSWNSLVSGLSWNYLLNDAQNTFDNMPTRDAVSWAAIISAHVHADQGEIAWQLF 532
Query: 184 LRMHYNGLLPDQSIFVVTLSAITGL 258
L M GL P+ LSA L
Sbjct: 533 LDMLSAGLKPNDLTITSLLSACGNL 557
>ref|XP_003581008.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Brachypodium distachyon]
Length = 921
Score = 124 bits (311), Expect = 8e-27
Identities = 58/110 (52%), Positives = 79/110 (71%)
Frame = +1
Query: 4 MPERNVASWNTLLTGYSHCGQMDEACWLFEQMRERDLVSWMVMISGYVHIDEYDKGWKLF 183
MP R+V SWN+++TGY H QM +A LF+QM +R+LV+W VMISGYV I+++ KGW +F
Sbjct: 152 MPSRDVTSWNSMVTGYCHSRQMVDAWNLFKQMPQRNLVTWTVMISGYVRIEQHGKGWDIF 211
Query: 184 LRMHYNGLLPDQSIFVVTLSAITGLNDPFLIGTLRTLSIKTSYEENVVVG 333
MH+ G PDQS F LSA+TGL D ++ LR L +KT +E +VV+G
Sbjct: 212 RMMHHEGASPDQSNFASVLSAVTGLQDLGVLEVLRPLVLKTGFESDVVIG 261
Score = 63.5 bits (153), Expect = 2e-08
Identities = 34/110 (30%), Positives = 57/110 (51%)
Frame = +1
Query: 1 EMPERNVASWNTLLTGYSHCGQMDEACWLFEQMRERDLVSWMVMISGYVHIDEYDKGWKL 180
++P+ V SWN ++TGY G +DEA LF++M R+ +SW MI+GY ++ L
Sbjct: 346 QIPDPIVVSWNAMITGYMQNGMVDEAKELFDRMPFRNTISWAGMIAGYAQNGRSEEALDL 405
Query: 181 FLRMHYNGLLPDQSIFVVTLSAITGLNDPFLIGTLRTLSIKTSYEENVVV 330
+H NG+LP S + A + + + +L++K + N V
Sbjct: 406 LQALHRNGMLPSLSSLTSSFLACSHIGALETGRQVHSLAVKAGCQFNSYV 455
Score = 56.6 bits (135), Expect = 2e-06
Identities = 29/109 (26%), Positives = 52/109 (47%)
Frame = +1
Query: 4 MPERNVASWNTLLTGYSHCGQMDEACWLFEQMRERDLVSWMVMISGYVHIDEYDKGWKLF 183
M ++ SWN+ + +++A +F+ M RD+VSW +IS Y + D+ + F
Sbjct: 479 MRVKDTVSWNSFIAALVQNNMLEDARHIFDNMLSRDVVSWTTIISAYAQAERGDEAVEFF 538
Query: 184 LRMHYNGLLPDQSIFVVTLSAITGLNDPFLIGTLRTLSIKTSYEENVVV 330
M + P+ I + LS GL L + T++IK + ++V
Sbjct: 539 KTMLHEHEKPNSPILTILLSVCGGLGSAKLGQQIHTVAIKHGMDSELIV 587
>ref|NP_001172804.1| Os02g0151000 [Oryza sativa Japonica Group]
gi|51535971|dbj|BAD38052.1| putative pentatricopeptide
(PPR) repeat-containing protein [Oryza sativa Japonica
Group] gi|218190072|gb|EEC72499.1| hypothetical protein
OsI_05871 [Oryza sativa Indica Group]
gi|255670608|dbj|BAH91533.1| Os02g0151000 [Oryza sativa
Japonica Group]
Length = 922
Score = 123 bits (308), Expect = 2e-26
Identities = 59/110 (53%), Positives = 80/110 (72%)
Frame = +1
Query: 4 MPERNVASWNTLLTGYSHCGQMDEACWLFEQMRERDLVSWMVMISGYVHIDEYDKGWKLF 183
MP R+V+SWN++LTGY H QM +A LFE+M ER+LVSW VMISGY I+ + K W +F
Sbjct: 153 MPSRDVSSWNSMLTGYCHSLQMVDARNLFEKMPERNLVSWTVMISGYGRIENHGKAWDIF 212
Query: 184 LRMHYNGLLPDQSIFVVTLSAITGLNDPFLIGTLRTLSIKTSYEENVVVG 333
+MH GLLPDQS F LSA+ GL + ++ +LR L++KT +E +VV+G
Sbjct: 213 CKMHREGLLPDQSNFASALSAVKGLGNLDVLESLRVLALKTGFERDVVIG 262
Score = 60.8 bits (146), Expect = 1e-07
Identities = 29/74 (39%), Positives = 44/74 (59%)
Frame = +1
Query: 1 EMPERNVASWNTLLTGYSHCGQMDEACWLFEQMRERDLVSWMVMISGYVHIDEYDKGWKL 180
++PE V SWN L+TGY G ++EA LF++M R+ +SW MI+GY ++ L
Sbjct: 347 QIPEPIVVSWNALITGYMQNGMVNEAKELFDKMPFRNTISWAGMIAGYAQNGRSEEALGL 406
Query: 181 FLRMHYNGLLPDQS 222
+H +G+LP S
Sbjct: 407 LQELHRSGMLPSLS 420
Score = 54.7 bits (130), Expect = 8e-06
Identities = 30/109 (27%), Positives = 50/109 (45%)
Frame = +1
Query: 4 MPERNVASWNTLLTGYSHCGQMDEACWLFEQMRERDLVSWMVMISGYVHIDEYDKGWKLF 183
M +++ SWN+ L +DEA F+ M RD VSW +IS Y H ++ ++ F
Sbjct: 480 MVTKDIVSWNSFLAALVQNDLLDEARNTFDNMLSRDDVSWTTIISAYAHAEQSNEAMGAF 539
Query: 184 LRMHYNGLLPDQSIFVVTLSAITGLNDPFLIGTLRTLSIKTSYEENVVV 330
M LP+ I + L L + + T++IK + ++V
Sbjct: 540 KTMFCEHELPNSPILTILLGVCGSLGASKIGQQIHTVAIKLGMDSELIV 588
>gb|EEE56309.1| hypothetical protein OsJ_05395 [Oryza sativa Japonica Group]
Length = 922
Score = 123 bits (308), Expect = 2e-26
Identities = 59/110 (53%), Positives = 80/110 (72%)
Frame = +1
Query: 4 MPERNVASWNTLLTGYSHCGQMDEACWLFEQMRERDLVSWMVMISGYVHIDEYDKGWKLF 183
MP R+V+SWN++LTGY H QM +A LFE+M ER+LVSW VMISGY I+ + K W +F
Sbjct: 153 MPSRDVSSWNSMLTGYCHSLQMVDARNLFEKMPERNLVSWTVMISGYGRIENHGKAWDIF 212
Query: 184 LRMHYNGLLPDQSIFVVTLSAITGLNDPFLIGTLRTLSIKTSYEENVVVG 333
+MH GLLPDQS F LSA+ GL + ++ +LR L++KT +E +VV+G
Sbjct: 213 CKMHREGLLPDQSNFASALSAVKGLGNLDVLESLRVLALKTGFERDVVIG 262
Score = 60.8 bits (146), Expect = 1e-07
Identities = 29/74 (39%), Positives = 44/74 (59%)
Frame = +1
Query: 1 EMPERNVASWNTLLTGYSHCGQMDEACWLFEQMRERDLVSWMVMISGYVHIDEYDKGWKL 180
++PE V SWN L+TGY G ++EA LF++M R+ +SW MI+GY ++ L
Sbjct: 347 QIPEPIVVSWNALITGYMQNGMVNEAKELFDKMPFRNTISWAGMIAGYAQNGRSEEALGL 406
Query: 181 FLRMHYNGLLPDQS 222
+H +G+LP S
Sbjct: 407 LQELHRSGMLPSLS 420
Score = 54.7 bits (130), Expect = 8e-06
Identities = 30/109 (27%), Positives = 50/109 (45%)
Frame = +1
Query: 4 MPERNVASWNTLLTGYSHCGQMDEACWLFEQMRERDLVSWMVMISGYVHIDEYDKGWKLF 183
M +++ SWN+ L +DEA F+ M RD VSW +IS Y H ++ ++ F
Sbjct: 480 MVTKDIVSWNSFLAALVQNDLLDEARNTFDNMLSRDDVSWTTIISAYAHAEQSNEAMGAF 539
Query: 184 LRMHYNGLLPDQSIFVVTLSAITGLNDPFLIGTLRTLSIKTSYEENVVV 330
M LP+ I + L L + + T++IK + ++V
Sbjct: 540 KTMFCEHELPNSPILTILLGVCGSLGASKIGQQIHTVAIKLGMDSELIV 588