BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00037210
         (227 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002283327.1| PREDICTED: pentatricopeptide repeat-containi...   126   2e-27
ref|XP_004157129.1| PREDICTED: LOW QUALITY PROTEIN: pentatricope...   122   2e-26
ref|XP_004145582.1| PREDICTED: pentatricopeptide repeat-containi...   122   2e-26
ref|XP_002515418.1| pentatricopeptide repeat-containing protein,...   120   1e-25
ref|XP_002869309.1| hypothetical protein ARALYDRAFT_491552 [Arab...   119   3e-25

>ref|XP_002283327.1| PREDICTED: pentatricopeptide repeat-containing protein At4g31850,
           chloroplastic [Vitis vinifera]
           gi|296082142|emb|CBI21147.3| unnamed protein product
           [Vitis vinifera]
          Length = 1113

 Score =  126 bits (316), Expect = 2e-27
 Identities = 58/75 (77%), Positives = 68/75 (90%)
 Frame = -3

Query: 225 KVRDTETVIGLLAEMEILGLRPNVYSFTICIRVLGRAGKIDEAHAIMRRMEEEGCGPDVV 46
           K RD ETV+GLL EME LGLRPN+Y+FTICIR+LGRAGKIDEA+ I++RM++ GCGPDVV
Sbjct: 239 KRRDIETVMGLLQEMESLGLRPNIYTFTICIRILGRAGKIDEAYGILKRMDDAGCGPDVV 298

Query: 45  TYTVLIDALCNVGRL 1
           TYTVLIDALCN G+L
Sbjct: 299 TYTVLIDALCNAGKL 313


>ref|XP_004157129.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g31850, chloroplastic-like [Cucumis sativus]
          Length = 1113

 Score =  122 bits (307), Expect = 2e-26
 Identities = 59/75 (78%), Positives = 67/75 (89%)
 Frame = -3

Query: 225 KVRDTETVIGLLAEMEILGLRPNVYSFTICIRVLGRAGKIDEAHAIMRRMEEEGCGPDVV 46
           K RD+E V+ LL EME LGLRPNVY+FTICIRVLGRAGKIDEA+ I RRM++EGCGPD+V
Sbjct: 239 KKRDSEMVMVLLKEMEDLGLRPNVYTFTICIRVLGRAGKIDEAYEIFRRMDDEGCGPDLV 298

Query: 45  TYTVLIDALCNVGRL 1
           TYTVLIDALCN G+L
Sbjct: 299 TYTVLIDALCNAGQL 313



 Score = 56.6 bits (135), Expect = 2e-06
 Identities = 29/75 (38%), Positives = 40/75 (53%)
 Frame = -3

Query: 225  KVRDTETVIGLLAEMEILGLRPNVYSFTICIRVLGRAGKIDEAHAIMRRMEEEGCGPDVV 46
            KV   E  + L  EM   G +PN   F I I   G+ G  + A  + +RM  EG  PD+ 
Sbjct: 905  KVGRLEEAMRLFEEMSDYGCKPNCAIFNILINGYGKIGDTETACQLFKRMVNEGIRPDLK 964

Query: 45   TYTVLIDALCNVGRL 1
            +YT+L+D LC  GR+
Sbjct: 965  SYTILVDCLCLAGRV 979


>ref|XP_004145582.1| PREDICTED: pentatricopeptide repeat-containing protein At4g31850,
           chloroplastic-like [Cucumis sativus]
          Length = 1113

 Score =  122 bits (307), Expect = 2e-26
 Identities = 59/75 (78%), Positives = 67/75 (89%)
 Frame = -3

Query: 225 KVRDTETVIGLLAEMEILGLRPNVYSFTICIRVLGRAGKIDEAHAIMRRMEEEGCGPDVV 46
           K RD+E V+ LL EME LGLRPNVY+FTICIRVLGRAGKIDEA+ I RRM++EGCGPD+V
Sbjct: 239 KKRDSEMVMVLLKEMEDLGLRPNVYTFTICIRVLGRAGKIDEAYEIFRRMDDEGCGPDLV 298

Query: 45  TYTVLIDALCNVGRL 1
           TYTVLIDALCN G+L
Sbjct: 299 TYTVLIDALCNAGQL 313



 Score = 56.6 bits (135), Expect = 2e-06
 Identities = 29/75 (38%), Positives = 40/75 (53%)
 Frame = -3

Query: 225  KVRDTETVIGLLAEMEILGLRPNVYSFTICIRVLGRAGKIDEAHAIMRRMEEEGCGPDVV 46
            KV   E  + L  EM   G +PN   F I I   G+ G  + A  + +RM  EG  PD+ 
Sbjct: 905  KVGRLEEAMRLFEEMSDYGCKPNCAIFNILINGYGKIGDTETACQLFKRMVNEGIRPDLK 964

Query: 45   TYTVLIDALCNVGRL 1
            +YT+L+D LC  GR+
Sbjct: 965  SYTILVDCLCLAGRV 979


>ref|XP_002515418.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223545362|gb|EEF46867.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 1113

 Score =  120 bits (301), Expect = 1e-25
 Identities = 57/75 (76%), Positives = 66/75 (88%)
 Frame = -3

Query: 225 KVRDTETVIGLLAEMEILGLRPNVYSFTICIRVLGRAGKIDEAHAIMRRMEEEGCGPDVV 46
           K RDTETV  LL EME LGL+PN+Y++TICIRVLGRAG+IDEA  IM+RME++GCGPDVV
Sbjct: 241 KRRDTETVKSLLEEMESLGLKPNIYTYTICIRVLGRAGRIDEACRIMKRMEDDGCGPDVV 300

Query: 45  TYTVLIDALCNVGRL 1
           TYTVLIDALC  G+L
Sbjct: 301 TYTVLIDALCTAGKL 315


>ref|XP_002869309.1| hypothetical protein ARALYDRAFT_491552 [Arabidopsis lyrata subsp.
           lyrata] gi|297315145|gb|EFH45568.1| hypothetical protein
           ARALYDRAFT_491552 [Arabidopsis lyrata subsp. lyrata]
          Length = 1114

 Score =  119 bits (298), Expect = 3e-25
 Identities = 56/75 (74%), Positives = 67/75 (89%)
 Frame = -3

Query: 225 KVRDTETVIGLLAEMEILGLRPNVYSFTICIRVLGRAGKIDEAHAIMRRMEEEGCGPDVV 46
           K RD E+V+GLL EME LGL+PNVY+FTICIRVLGRAGKI+EA+ I++RM++EGCGPDVV
Sbjct: 237 KRRDIESVMGLLKEMETLGLKPNVYTFTICIRVLGRAGKINEAYEILKRMDDEGCGPDVV 296

Query: 45  TYTVLIDALCNVGRL 1
           TYTVLIDALC   +L
Sbjct: 297 TYTVLIDALCTARKL 311



 Score = 60.5 bits (145), Expect = 1e-07
 Identities = 30/65 (46%), Positives = 40/65 (61%)
 Frame = -3

Query: 195  LLAEMEILGLRPNVYSFTICIRVLGRAGKIDEAHAIMRRMEEEGCGPDVVTYTVLIDALC 16
            L   M   G RPN   + I I   G+AG+ D A A+ +RM +EG  PD+ TY+VL+D LC
Sbjct: 915  LFEGMSDYGCRPNCAIYNILINGFGKAGEADAACALFKRMVKEGVRPDLKTYSVLVDCLC 974

Query: 15   NVGRL 1
             VGR+
Sbjct: 975  MVGRV 979