BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00037153
         (279 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

pir||T00833 RNA-directed DNA polymerase homolog T13L16.7 - Arabi...    61   1e-07
gb|AAD24831.1| putative non-LTR retroelement reverse transcripta...    59   4e-07
gb|AAD20714.1| putative non-LTR retroelement reverse transcripta...    59   4e-07
ref|XP_002893907.1| predicted protein [Arabidopsis lyrata subsp....    59   5e-07
gb|AAC33961.1| contains similarity to reverse trancriptase (Pfam...    57   1e-06

>pir||T00833 RNA-directed DNA polymerase homolog T13L16.7 - Arabidopsis thaliana
           (fragment)
          Length = 1365

 Score = 60.8 bits (146), Expect = 1e-07
 Identities = 31/83 (37%), Positives = 47/83 (56%)
 Frame = +1

Query: 1   ALLYKDNIDLEILGTSSYAITGKFRNFLTNDDWFISFVYGNPVASRTKIVWDHLRTLGSN 180
           A+ +K ++++E L      +  +  +   N  WFIS VYG PV      +W+HL ++G  
Sbjct: 68  AIFWKSHLEIEFLYADKNLMDLQVSS--RNKVWFISCVYGLPVTHMRPKLWEHLNSIGLK 125

Query: 181 IVGAWVLWGDFNAILSSEEKIGG 249
              AW L GDFN I S++EK+GG
Sbjct: 126 RAEAWCLIGDFNDIRSNDEKLGG 148


>gb|AAD24831.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
           thaliana]
          Length = 1524

 Score = 58.9 bits (141), Expect = 4e-07
 Identities = 30/83 (36%), Positives = 44/83 (53%)
 Frame = +1

Query: 1   ALLYKDNIDLEILGTSSYAITGKFRNFLTNDDWFISFVYGNPVASRTKIVWDHLRTLGSN 180
           AL++K+N+ L ++      I         N  +++S VYG+P  S    +W  L  +  N
Sbjct: 224 ALMWKNNVSLSLISQDERLIDSHVT--FNNKSFYLSCVYGHPTQSERHQLWQTLEHISDN 281

Query: 181 IVGAWVLWGDFNAILSSEEKIGG 249
               W+L GDFN ILS+ EKIGG
Sbjct: 282 RNAEWLLVGDFNEILSNAEKIGG 304


>gb|AAD20714.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
           thaliana]
          Length = 1750

 Score = 58.9 bits (141), Expect = 4e-07
 Identities = 30/83 (36%), Positives = 44/83 (53%)
 Frame = +1

Query: 1   ALLYKDNIDLEILGTSSYAITGKFRNFLTNDDWFISFVYGNPVASRTKIVWDHLRTLGSN 180
           AL++K+N+ L ++      I         N  +++S VYG+P  S    +W  L  +  N
Sbjct: 450 ALMWKNNVSLSLISQDERLIDSHVT--FNNKSFYLSCVYGHPTQSERHQLWQTLEHISDN 507

Query: 181 IVGAWVLWGDFNAILSSEEKIGG 249
               W+L GDFN ILS+ EKIGG
Sbjct: 508 RNAEWLLVGDFNEILSNAEKIGG 530


>ref|XP_002893907.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
           gi|297339749|gb|EFH70166.1| predicted protein
           [Arabidopsis lyrata subsp. lyrata]
          Length = 110

 Score = 58.5 bits (140), Expect = 5e-07
 Identities = 33/83 (39%), Positives = 51/83 (61%)
 Frame = +1

Query: 1   ALLYKDNIDLEILGTSSYAITGKFRNFLTNDDWFISFVYGNPVASRTKIVWDHLRTLGSN 180
           AL +KD+ ++EIL + S  I  K +  L +  ++IS VYG+PVA   +IVWD L  +   
Sbjct: 19  ALFWKDSYNVEILFSDSRIIDAKVK--LGSLIFYISCVYGDPVAHLRQIVWDKLIDISVL 76

Query: 181 IVGAWVLWGDFNAILSSEEKIGG 249
               W++ GD N I+++ EK+GG
Sbjct: 77  RNDPWLVLGDLNEIMNNSEKLGG 99


>gb|AAC33961.1| contains similarity to reverse trancriptase (Pfam: rvt.hmm, score:
           42.57) [Arabidopsis thaliana]
          Length = 1662

 Score = 57.4 bits (137), Expect = 1e-06
 Identities = 32/83 (38%), Positives = 44/83 (53%)
 Frame = +1

Query: 1   ALLYKDNIDLEILGTSSYAITGKFRNFLTNDDWFISFVYGNPVASRTKIVWDHLRTLGSN 180
           ALL+KD++ L  L      I       + N ++++S VYG+P  S    +W H   L   
Sbjct: 450 ALLWKDSVRLSNLYQDDRHIDVHIS--INNINFYLSRVYGHPCQSERHSLWTHFENLSKT 507

Query: 181 IVGAWVLWGDFNAILSSEEKIGG 249
               W+L GDFN ILS+ EKIGG
Sbjct: 508 RNDPWILIGDFNEILSNNEKIGG 530