BLASTX nr result

ID: Coptis21_contig00037070 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00037070
         (727 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AFP55550.1| hypothetical protein [Rosa rugosa]                      56   7e-06
ref|XP_002461638.1| hypothetical protein SORBIDRAFT_02g005845 [S...    56   7e-06

>gb|AFP55550.1| hypothetical protein [Rosa rugosa]
          Length = 1196

 Score = 56.2 bits (134), Expect = 7e-06
 Identities = 50/227 (22%), Positives = 91/227 (40%)
 Frame = +2

Query: 47  QFRSSFVPMVQLIKNLKNKMGERYLKAIRDTPFRIPFDAFYNKQIGEDDTRISSQLIYTI 226
           Q+R + +  ++ I   KN + E  L+ ++ TPF    DAF+   I E D + S  LI  +
Sbjct: 230 QYRCTMLAFLKTIAENKNNLTEGTLELLQKTPFATLIDAFHGGSIKEKDAKKSDDLITLL 289

Query: 227 LVAYCKNRHAFRIGKTWMSLSVEDVVLLFGLPISETKLEPTSQHK*DVNDDLRKTRFFKE 406
           L AY  +   F  G     +S  D+ ++ G+P S   +  T +           T++F +
Sbjct: 290 LQAYNSDTDLFVFGNRKFRMSTSDISMILGVPASGLSVPKTKE---GAYKSEFVTKYFDK 346

Query: 407 YQLGVKDVIPVHILRGIENSLDN*ASITPDDFARLVVLYMMNMIFFASPAYRWTFYRWTF 586
            Q   K      + + +  + +     T  D   + VL ++N+              W +
Sbjct: 347 KQRINKAAAEEALKKALAETPETGDEKTKRD-RNVAVLVLLNLFIKLLFPNSGGTISWDY 405

Query: 587 YHIYCVLDLAKLKSYSWPHIVYDQLMHQVETSSLDDIGAFTGCAFLL 727
             +    ++  L  YSW   V D L   ++  + +      GC  L+
Sbjct: 406 IRV--CEEVESLGKYSWAKEVGDFLKKSIKRKAKESQN-MAGCVILV 449


>ref|XP_002461638.1| hypothetical protein SORBIDRAFT_02g005845 [Sorghum bicolor]
           gi|241925015|gb|EER98159.1| hypothetical protein
           SORBIDRAFT_02g005845 [Sorghum bicolor]
          Length = 792

 Score = 56.2 bits (134), Expect = 7e-06
 Identities = 41/178 (23%), Positives = 81/178 (45%)
 Frame = +2

Query: 194 TRISSQLIYTILVAYCKNRHAFRIGKTWMSLSVEDVVLLFGLPISETKLEPTSQHK*DVN 373
           T +   ++  +   Y  + H+F +    +S+  +DV  + GL I    +E   +      
Sbjct: 44  TNLRKYMLQELAGMYEVSNHSFNLCGEELSIYPQDVNNIMGLRIEGDDIEKYLKENAKNE 103

Query: 374 DDLRKTRFFKEYQLGVKDVIPVHILRGIENSLDN*ASITPDDFARLVVLYMMNMIFFASP 553
           + + KT FFK Y      +     LRG+E+ +D  +    DDF R  VL+ + +I  ++ 
Sbjct: 104 EVIVKTEFFKRYAAANNKL----ELRGLEDMIDT-SQPEDDDFKRAFVLFTIGVILASTT 158

Query: 554 AYRWTFYRWTFYHIYCVLDLAKLKSYSWPHIVYDQLMHQVETSSLDDIGAFTGCAFLL 727
               T+  W++  +  V D++K+++++W     + L H + T   +   +  G   LL
Sbjct: 159 T---TYVDWSYIEV--VRDVSKIRNFNWGQFTLNHLFHSLRTYKTEGKKSIQGNLALL 211


Top