BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00036942
         (364 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ACS88375.1| retrotransposon protein [Coix lacryma-jobi]             91   7e-17
emb|CAB45815.1| putative protein [Arabidopsis thaliana] gi|72688...    90   2e-16
gb|AAD27571.1|AF114171_12 polyprotein [Sorghum bicolor] gi|43780...    88   6e-16
gb|AAF79618.1|AC027665_19 F5M15.26 [Arabidopsis thaliana]              88   8e-16
gb|AAD20101.1| putative retroelement pol polyprotein [Arabidopsi...    87   1e-15

>gb|ACS88375.1| retrotransposon protein [Coix lacryma-jobi]
          Length = 1902

 Score = 91.3 bits (225), Expect = 7e-17
 Identities = 45/115 (39%), Positives = 68/115 (59%), Gaps = 4/115 (3%)
 Frame = -3

Query: 353 PLCFSDRDLMGVHHPHYDAVVISAFIGLWRVQRIMIDTGSSVSVIFAGCYKNMQLSENLI 174
           P+ F  RD+    +PH DA+VI   +  W V +I++DTGSS  ++FA  + +M+L  NL+
Sbjct: 644 PITFDSRDMKLRDYPHTDAMVIETNLAGWTVTKILVDTGSSADILFASTFDSMKLDRNLL 703

Query: 173 IAEKNPIIGFDGTATTPIGRVSLPVTLMDKV----VDIEFFLMNCKSPYNAILGR 21
               NP+ GF G     +G++SLPVT  D++      I F +++   PYNAI GR
Sbjct: 704 QPADNPLYGFGGQQVRAVGKISLPVTFGDQINCRTEHITFDVVDMFYPYNAIFGR 758


>emb|CAB45815.1| putative protein [Arabidopsis thaliana] gi|7268845|emb|CAB79049.1|
           putative protein [Arabidopsis thaliana]
          Length = 853

 Score = 89.7 bits (221), Expect = 2e-16
 Identities = 45/117 (38%), Positives = 71/117 (60%)
 Frame = -3

Query: 353 PLCFSDRDLMGVHHPHYDAVVISAFIGLWRVQRIMIDTGSSVSVIFAGCYKNMQLSENLI 174
           P+ F+  D  G+ HPH DA+VI   +  + V+RI+IDTGSSV+++F      M +SE+ I
Sbjct: 462 PIIFTSEDASGIQHPHNDALVIKLVMEDFDVERILIDTGSSVNLMFLKTLFKMGISESKI 521

Query: 173 IAEKNPIIGFDGTATTPIGRVSLPVTLMDKVVDIEFFLMNCKSPYNAILGRDWLHSM 3
           + +  P+ G+DG A   IG + L V +       +F +++ +  YNAILG  W++SM
Sbjct: 522 MPKIRPMTGYDGEAKMSIGEIKLQVQVGGITQKTKFVVIDSEPIYNAILGSPWIYSM 578


>gb|AAD27571.1|AF114171_12 polyprotein [Sorghum bicolor] gi|4378066|gb|AAD19359.1| polyprotein
           [Sorghum bicolor]
          Length = 1877

 Score = 88.2 bits (217), Expect = 6e-16
 Identities = 45/119 (37%), Positives = 73/119 (61%), Gaps = 4/119 (3%)
 Frame = -3

Query: 353 PLCFSDRDLMGVHHPHYDAVVISAFIGLWRVQRIMIDTGSSVSVIFAGCYKNMQLSENLI 174
           P+ F++ DL    +PH DA+VI+  +  W V RI++D+GSS  +IFAG +  M+LS + +
Sbjct: 619 PITFTEEDLRLESYPHTDALVITTNVAGWGVSRILVDSGSSADIIFAGTFDQMKLSRSQL 678

Query: 173 IAEKNPIIGFDGTATTPIGRVSLPV----TLMDKVVDIEFFLMNCKSPYNAILGRDWLH 9
              ++P+IGF G     +G+V+LPV    T   +   + F +++   PYNAI GR +L+
Sbjct: 679 QPSESPLIGFGGKQIHALGKVALPVSFGTTENARTEYVTFDVVDLHYPYNAIFGRGFLN 737


>gb|AAF79618.1|AC027665_19 F5M15.26 [Arabidopsis thaliana]
          Length = 1838

 Score = 87.8 bits (216), Expect = 8e-16
 Identities = 43/120 (35%), Positives = 66/120 (55%)
 Frame = -3

Query: 362 EPGPLCFSDRDLMGVHHPHYDAVVISAFIGLWRVQRIMIDTGSSVSVIFAGCYKNMQLSE 183
           +  P+ F+D DL G+  PH D +V+   I   RV R++IDTGSSV +IF      M +++
Sbjct: 596 QSAPISFTDVDLEGLDTPHNDPLVVELIISDSRVTRVLIDTGSSVDLIFKDVLTAMNITD 655

Query: 182 NLIIAEKNPIIGFDGTATTPIGRVSLPVTLMDKVVDIEFFLMNCKSPYNAILGRDWLHSM 3
             I     P+ GFDG     IG + LP+ +   +  ++F ++   + YN ILG  W+H M
Sbjct: 656 RQIKPVSKPLAGFDGDFVMTIGTIKLPIFVGGLIAWVKFVVIGKPAVYNVILGTPWIHQM 715


>gb|AAD20101.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 764

 Score = 87.4 bits (215), Expect = 1e-15
 Identities = 47/120 (39%), Positives = 65/120 (54%)
 Frame = -3

Query: 362 EPGPLCFSDRDLMGVHHPHYDAVVISAFIGLWRVQRIMIDTGSSVSVIFAGCYKNMQLSE 183
           E  PL F+  DL GV  PH D +VI   IG   V RI+IDTGSSV+V+F    + M++ +
Sbjct: 326 EMTPLTFTSEDLFGVDLPHNDPLVIELHIGESEVTRILIDTGSSVNVVFKDVLQKMKVHD 385

Query: 182 NLIIAEKNPIIGFDGTATTPIGRVSLPVTLMDKVVDIEFFLMNCKSPYNAILGRDWLHSM 3
             I     P+ GFDG      G + LP+ L       +F +++  + YN ILG  W+H M
Sbjct: 386 RHIKPSVRPLTGFDGNTMMTNGTIKLPIYLGGAATWHKFVVVDKPTIYNIILGTPWIHDM 445