BLASTX nr result
ID: Coptis21_contig00036605
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis21_contig00036605
(233 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_003619749.1| Pentatricopeptide repeat-containing protein ... 73 1e-12
ref|XP_003533600.1| PREDICTED: pentatricopeptide repeat-containi... 74 5e-12
ref|XP_002309701.1| predicted protein [Populus trichocarpa] gi|2... 72 1e-11
ref|XP_003544331.1| PREDICTED: pentatricopeptide repeat-containi... 74 2e-11
ref|XP_003620177.1| Pentatricopeptide repeat-containing protein ... 72 2e-11
>ref|XP_003619749.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355494764|gb|AES75967.1| Pentatricopeptide
repeat-containing protein [Medicago truncatula]
Length = 680
Score = 72.8 bits (177), Expect(2) = 1e-12
Identities = 33/64 (51%), Positives = 47/64 (73%)
Frame = -2
Query: 193 SRNVWQGVTADVITYASLICGLCISKQWKKSTDLFNDMTSRGISPDVYTYTILVDVFCKE 14
S V + ++++++TY++LI G CI + K + LFN MTS I+PDVYT+ ILVD FCKE
Sbjct: 234 SEMVSRRISSNIVTYSALISGFCIVGKLKDAIGLFNKMTSENINPDVYTFNILVDAFCKE 293
Query: 13 GRVE 2
GRV+
Sbjct: 294 GRVK 297
Score = 24.6 bits (52), Expect(2) = 1e-12
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = -3
Query: 231 CKENRVNDAIGLFQEM 184
CK+ VNDA L+ EM
Sbjct: 221 CKDKNVNDAFDLYSEM 236
>ref|XP_003533600.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62670,
mitochondrial-like [Glycine max]
Length = 694
Score = 74.3 bits (181), Expect(2) = 5e-12
Identities = 31/59 (52%), Positives = 45/59 (76%)
Frame = -2
Query: 178 QGVTADVITYASLICGLCISKQWKKSTDLFNDMTSRGISPDVYTYTILVDVFCKEGRVE 2
+G+ DVITY++LICG C++ Q + L N+MT + I+PDVYTYTIL+D CKEG+++
Sbjct: 301 RGIFPDVITYSTLICGFCLAGQLMGAFSLLNEMTLKNINPDVYTYTILIDALCKEGKLK 359
Score = 21.2 bits (43), Expect(2) = 5e-12
Identities = 7/19 (36%), Positives = 12/19 (63%)
Frame = -3
Query: 231 CKENRVNDAIGLFQEMSGK 175
CK+ VN+A + EM+ +
Sbjct: 283 CKDKLVNEAYDFYTEMNSR 301
Score = 59.7 bits (143), Expect = 2e-07
Identities = 29/59 (49%), Positives = 38/59 (64%)
Frame = -2
Query: 178 QGVTADVITYASLICGLCISKQWKKSTDLFNDMTSRGISPDVYTYTILVDVFCKEGRVE 2
+G ADVITY SL+ GLC ++ K+ LF M RGI P+ YTYT L+D CK R++
Sbjct: 476 RGQPADVITYTSLLDGLCKNQNLDKAIALFMKMKERGIQPNKYTYTALIDGLCKGARLK 534
>ref|XP_002309701.1| predicted protein [Populus trichocarpa] gi|222855677|gb|EEE93224.1|
predicted protein [Populus trichocarpa]
Length = 597
Score = 72.4 bits (176), Expect(2) = 1e-11
Identities = 30/58 (51%), Positives = 43/58 (74%)
Frame = -2
Query: 178 QGVTADVITYASLICGLCISKQWKKSTDLFNDMTSRGISPDVYTYTILVDVFCKEGRV 5
+G++ D+ TY SLI GLC +WK+++ L N+MTS I PD+ T+ +LVD FCKEG+V
Sbjct: 262 KGISPDIFTYTSLIQGLCKFSRWKEASALLNEMTSLNIMPDIVTFNVLVDTFCKEGKV 319
Score = 21.6 bits (44), Expect(2) = 1e-11
Identities = 7/19 (36%), Positives = 12/19 (63%)
Frame = -3
Query: 231 CKENRVNDAIGLFQEMSGK 175
C++ VN+A+ +F M K
Sbjct: 244 CRDRLVNEALDIFSYMKAK 262
Score = 55.8 bits (133), Expect = 3e-06
Identities = 24/58 (41%), Positives = 41/58 (70%)
Frame = -2
Query: 184 VWQGVTADVITYASLICGLCISKQWKKSTDLFNDMTSRGISPDVYTYTILVDVFCKEG 11
+ QG+T + ++Y +LI G C + +++ DLF +M + G PD++TY+IL+D FCK+G
Sbjct: 400 IHQGLTPNNVSYNTLIHGFCQLGKLREAQDLFRNMCTNGNLPDLFTYSILLDGFCKQG 457
>ref|XP_003544331.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12300,
mitochondrial-like [Glycine max]
Length = 545
Score = 73.6 bits (179), Expect = 2e-11
Identities = 32/68 (47%), Positives = 46/68 (67%)
Frame = -2
Query: 205 YRSVSRNVWQGVTADVITYASLICGLCISKQWKKSTDLFNDMTSRGISPDVYTYTILVDV 26
Y + V +G++ DV+TY+ L+ G CI Q ++ DL N+M I+PD+YTYTILVD
Sbjct: 218 YDLYTEMVGKGISPDVVTYSILVSGFCIVGQLNRAIDLLNEMVLENINPDIYTYTILVDA 277
Query: 25 FCKEGRVE 2
CKEG+V+
Sbjct: 278 LCKEGKVK 285
Score = 55.1 bits (131), Expect = 6e-06
Identities = 27/59 (45%), Positives = 38/59 (64%)
Frame = -2
Query: 178 QGVTADVITYASLICGLCISKQWKKSTDLFNDMTSRGISPDVYTYTILVDVFCKEGRVE 2
+G DVITY +LI LC + ++ LFN M + I P+VYT+TIL+D CK GR++
Sbjct: 402 RGQPPDVITYNNLIDALCKNGHLDRAIALFNKMKDQAIRPNVYTFTILLDGLCKVGRLK 460
>ref|XP_003620177.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355495192|gb|AES76395.1| Pentatricopeptide
repeat-containing protein [Medicago truncatula]
Length = 612
Score = 71.6 bits (174), Expect(2) = 2e-11
Identities = 34/64 (53%), Positives = 46/64 (71%)
Frame = -2
Query: 193 SRNVWQGVTADVITYASLICGLCISKQWKKSTDLFNDMTSRGISPDVYTYTILVDVFCKE 14
S V +G++ DV+TY++LI G CI + + LFN M S I+PDVYT++ILVD FCKE
Sbjct: 220 SEMVSKGISPDVVTYSALISGFCILGKLNDAIGLFNKMISEEINPDVYTFSILVDGFCKE 279
Query: 13 GRVE 2
GRV+
Sbjct: 280 GRVK 283
Score = 21.9 bits (45), Expect(2) = 2e-11
Identities = 9/19 (47%), Positives = 11/19 (57%)
Frame = -3
Query: 231 CKENRVNDAIGLFQEMSGK 175
CK VN+A L+ EM K
Sbjct: 207 CKVKLVNEAFDLYSEMVSK 225
Score = 57.0 bits (136), Expect(2) = 2e-07
Identities = 24/59 (40%), Positives = 39/59 (66%)
Frame = -2
Query: 178 QGVTADVITYASLICGLCISKQWKKSTDLFNDMTSRGISPDVYTYTILVDVFCKEGRVE 2
QG+ DV+TY SL+ G C+ KQ K+ +FN M G++ +V +Y I+++ FCK +V+
Sbjct: 295 QGIKPDVVTYCSLMDGYCLVKQVNKAKSIFNTMAQGGVTANVQSYNIMINGFCKIKKVD 353
Score = 23.1 bits (48), Expect(2) = 2e-07
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = -3
Query: 231 CKENRVNDAIGLFQEM 184
C ++NDAIGLF +M
Sbjct: 242 CILGKLNDAIGLFNKM 257
Score = 58.2 bits (139), Expect = 7e-07
Identities = 28/59 (47%), Positives = 37/59 (62%)
Frame = -2
Query: 178 QGVTADVITYASLICGLCISKQWKKSTDLFNDMTSRGISPDVYTYTILVDVFCKEGRVE 2
+GV D ITY S++ LC + Q K+ L M GI PD+YTYTIL+D CK GR++
Sbjct: 400 RGVPHDKITYNSILDALCKNHQVDKAIALLTKMKDEGIQPDMYTYTILIDGLCKGGRLK 458