BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00036472
         (416 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002278016.2| PREDICTED: RNA pseudourine synthase 1-like [...   164   9e-39
emb|CBI39587.3| unnamed protein product [Vitis vinifera]              164   9e-39
ref|XP_002512503.1| ribosomal pseudouridine synthase, putative [...   154   5e-36
ref|XP_003591214.1| Lon protease-like protein [Medicago truncatu...   148   5e-34
ref|XP_002318955.1| predicted protein [Populus trichocarpa] gi|2...   148   5e-34

>ref|XP_002278016.2| PREDICTED: RNA pseudourine synthase 1-like [Vitis vinifera]
          Length = 348

 Score =  164 bits (414), Expect = 9e-39
 Identities = 76/113 (67%), Positives = 93/113 (82%), Gaps = 1/113 (0%)
 Frame = -1

Query: 416 GKFKEPTRSRPSEEEFVVVEDKGVVCCDV-SDEILVRAYPQSGRTHQIRLHCQYLGIPIR 240
           G  KE   SR ++E  +VVE++ V+  +   DEILVRA+P+SGRTHQIRLHCQYLGI IR
Sbjct: 233 GNVKELPESRKADETVLVVEERSVIDSNARQDEILVRAFPRSGRTHQIRLHCQYLGISIR 292

Query: 239 GDVKYEGVHEWEGRAFDGHALHAESLLFDHPVTGLQVEFQAPLPSWAIQALEP 81
           GDVKYEGVHEW+G+ +DGH LHAESL F+HPVTG+ V F+APLPSWA+QAL+P
Sbjct: 293 GDVKYEGVHEWKGKIYDGHELHAESLSFEHPVTGVDVAFRAPLPSWAVQALQP 345


>emb|CBI39587.3| unnamed protein product [Vitis vinifera]
          Length = 274

 Score =  164 bits (414), Expect = 9e-39
 Identities = 76/113 (67%), Positives = 93/113 (82%), Gaps = 1/113 (0%)
 Frame = -1

Query: 416 GKFKEPTRSRPSEEEFVVVEDKGVVCCDV-SDEILVRAYPQSGRTHQIRLHCQYLGIPIR 240
           G  KE   SR ++E  +VVE++ V+  +   DEILVRA+P+SGRTHQIRLHCQYLGI IR
Sbjct: 159 GNVKELPESRKADETVLVVEERSVIDSNARQDEILVRAFPRSGRTHQIRLHCQYLGISIR 218

Query: 239 GDVKYEGVHEWEGRAFDGHALHAESLLFDHPVTGLQVEFQAPLPSWAIQALEP 81
           GDVKYEGVHEW+G+ +DGH LHAESL F+HPVTG+ V F+APLPSWA+QAL+P
Sbjct: 219 GDVKYEGVHEWKGKIYDGHELHAESLSFEHPVTGVDVAFRAPLPSWAVQALQP 271


>ref|XP_002512503.1| ribosomal pseudouridine synthase, putative [Ricinus communis]
           gi|223548464|gb|EEF49955.1| ribosomal pseudouridine
           synthase, putative [Ricinus communis]
          Length = 321

 Score =  154 bits (390), Expect = 5e-36
 Identities = 76/114 (66%), Positives = 89/114 (78%), Gaps = 1/114 (0%)
 Frame = -1

Query: 416 GKFKEPTRSRPSEEEFVVVEDKGVVCCDVSD-EILVRAYPQSGRTHQIRLHCQYLGIPIR 240
           G FKE +     +E  +VVE+K     DV   EILVRA+PQSGRTHQIRLHCQYLGI IR
Sbjct: 209 GSFKELSEFE-KDENILVVEEKAAKNADVKKVEILVRAFPQSGRTHQIRLHCQYLGISIR 267

Query: 239 GDVKYEGVHEWEGRAFDGHALHAESLLFDHPVTGLQVEFQAPLPSWAIQALEPV 78
           GDVKYEGV+EWEGR +DGH LHAE+L F+HPVTG+ V  +APLPSWAIQA +P+
Sbjct: 268 GDVKYEGVYEWEGRTYDGHELHAETLSFEHPVTGVPVMLRAPLPSWAIQASQPL 321


>ref|XP_003591214.1| Lon protease-like protein [Medicago truncatula]
           gi|355480262|gb|AES61465.1| Lon protease-like protein
           [Medicago truncatula]
          Length = 1262

 Score =  148 bits (373), Expect = 5e-34
 Identities = 74/111 (66%), Positives = 86/111 (77%), Gaps = 1/111 (0%)
 Frame = -1

Query: 416 GKFKEPTRSRPSEEEFVVVEDKGVVC-CDVSDEILVRAYPQSGRTHQIRLHCQYLGIPIR 240
           G F+E T     E   VVVE+K V    D  +EI+VRAYP+SGRTHQIRLHCQYLGI I 
Sbjct: 191 GGFREVTELGFEEGNVVVVEEKAVKMEGDDENEIVVRAYPRSGRTHQIRLHCQYLGISII 250

Query: 239 GDVKYEGVHEWEGRAFDGHALHAESLLFDHPVTGLQVEFQAPLPSWAIQAL 87
           GDVKYEGV+EW+GR +DGH LHAE+L FDHPVTG++V F+APLP WA QAL
Sbjct: 251 GDVKYEGVYEWKGRVYDGHHLHAETLSFDHPVTGVRVMFRAPLPQWANQAL 301



 Score = 54.3 bits (129), Expect = 1e-05
 Identities = 34/89 (38%), Positives = 45/89 (50%)
 Frame = -1

Query: 335  DVSDEILVRAYPQSGRTHQIRLHCQYLGIPIRGDVKYEGVHEWEGRAFDGHALHAESLLF 156
            +VSD ++V    ++ +   I+ HCQYLGI I GDVKYEG                    F
Sbjct: 1005 EVSDGVVVEE--KAVKMEGIQFHCQYLGISIIGDVKYEG--------------------F 1042

Query: 155  DHPVTGLQVEFQAPLPSWAIQALEPVSED 69
            DH VTG++V   A LP W  Q L  ++ D
Sbjct: 1043 DHLVTGVRVMLCASLPQWVNQVLSNMNID 1071


>ref|XP_002318955.1| predicted protein [Populus trichocarpa] gi|222857331|gb|EEE94878.1|
           predicted protein [Populus trichocarpa]
          Length = 261

 Score =  148 bits (373), Expect = 5e-34
 Identities = 71/107 (66%), Positives = 85/107 (79%), Gaps = 1/107 (0%)
 Frame = -1

Query: 416 GKFKEPTRSRPSEEEFVVVEDKGVVCCDVS-DEILVRAYPQSGRTHQIRLHCQYLGIPIR 240
           G F+EP+    S++  +VVE+K V+  D   DEILVRA+P+SGRTHQIRLHCQYLGIPIR
Sbjct: 146 GSFREPSEFN-SDKNILVVEEKAVIDTDAKKDEILVRAFPRSGRTHQIRLHCQYLGIPIR 204

Query: 239 GDVKYEGVHEWEGRAFDGHALHAESLLFDHPVTGLQVEFQAPLPSWA 99
           GDVKYEGV EW+GR +DGH LHAESL  +HPVTG  + F+APLP WA
Sbjct: 205 GDVKYEGVCEWKGRTYDGHELHAESLSLEHPVTGQPLMFRAPLPVWA 251