BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00036398
         (806 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003553418.1| PREDICTED: putative pentatricopeptide repeat...   412   e-113
ref|XP_002322703.1| predicted protein [Populus trichocarpa] gi|2...   408   e-112
ref|XP_002283419.2| PREDICTED: MATE efflux family protein 1 [Vit...   400   e-109
ref|XP_003625160.1| Pentatricopeptide repeat-containing protein ...   393   e-107
ref|NP_200075.1| mitochondrial RNA editing factor 1 [Arabidopsis...   387   e-105

>ref|XP_003553418.1| PREDICTED: putative pentatricopeptide repeat-containing protein
            At5g52630-like [Glycine max]
          Length = 582

 Score =  412 bits (1060), Expect = e-113
 Identities = 200/268 (74%), Positives = 230/268 (85%)
 Frame = -1

Query: 806  PNFITFLGVMLVCSHAGMVEKGQFFFGLMKKYTIEPGAQHYACLVDLLGRAGKLQEALSV 627
            PNFITFL ++  CSHAG+VEKG+  FGLMK++ IEPG+QHYA LVDLLGRAGKL+EA+ V
Sbjct: 310  PNFITFLCLLYACSHAGLVEKGEHCFGLMKEHGIEPGSQHYATLVDLLGRAGKLEEAVLV 369

Query: 626  IKEMPMQPTESVWGALMTGCRIHGNTELAAFAADKVFELGTVSSGMHVLLSNXXXXXXXX 447
            IKEMPMQPTESVWGAL+TGCRIHGNTELA+F ADKVFE+G VSSG+ VLLSN        
Sbjct: 370  IKEMPMQPTESVWGALLTGCRIHGNTELASFVADKVFEMGAVSSGIQVLLSNAYAAAGRW 429

Query: 446  XXXXXARKMLKDQGVKKETGLSWVEEGNRVNTFAAGDRTHPKSKQIFEKLEEIGEEMEQA 267
                 ARKM++DQG+KKETGLSWVEEGNRV+TFAAGDR+H K+++I+EKLEE+GEEM +A
Sbjct: 430  EEAARARKMMRDQGIKKETGLSWVEEGNRVHTFAAGDRSHGKTREIYEKLEELGEEMAKA 489

Query: 266  GYIADTSFVLKEVGAEEKKQTIGYHSEKLAIAFGLITFPCERPIRVMKNLRVCGDCHNWI 87
            GY+ADTSFVLKEV  +EK QTI YHSE+LAIAFGLITFP E PIRVMKNLRVCGDCH  I
Sbjct: 490  GYVADTSFVLKEVDGDEKSQTIRYHSERLAIAFGLITFPPEWPIRVMKNLRVCGDCHTAI 549

Query: 86   KFVSKCTERTIIVRDNNRFHRFDGGTCS 3
            KF+SKCT R IIVRDNNRFHRF+ G C+
Sbjct: 550  KFISKCTGRVIIVRDNNRFHRFEDGKCT 577


>ref|XP_002322703.1| predicted protein [Populus trichocarpa] gi|222867333|gb|EEF04464.1|
            predicted protein [Populus trichocarpa]
          Length = 627

 Score =  408 bits (1048), Expect = e-112
 Identities = 197/268 (73%), Positives = 228/268 (85%)
 Frame = -1

Query: 806  PNFITFLGVMLVCSHAGMVEKGQFFFGLMKKYTIEPGAQHYACLVDLLGRAGKLQEALSV 627
            PNFITFL V+  CSHAG+VE+G+ +F LMKKY IEPG QHYA +VDLLGRAGKLQEALSV
Sbjct: 355  PNFITFLCVLYACSHAGLVEEGKKYFALMKKYEIEPGTQHYASMVDLLGRAGKLQEALSV 414

Query: 626  IKEMPMQPTESVWGALMTGCRIHGNTELAAFAADKVFELGTVSSGMHVLLSNXXXXXXXX 447
            IK MP +PTESVWGA +TGCRIHGNT+LAAFAADKVFELG VSSG+HV+LSN        
Sbjct: 415  IKGMPTEPTESVWGAFITGCRIHGNTDLAAFAADKVFELGAVSSGLHVMLSNAYAAAGRY 474

Query: 446  XXXXXARKMLKDQGVKKETGLSWVEEGNRVNTFAAGDRTHPKSKQIFEKLEEIGEEMEQA 267
                 ARKML+D+GVKKETGLSW+EEGNRV+ FAAGDR H + K+I++KLE++GEEME+A
Sbjct: 475  EDAAKARKMLRDRGVKKETGLSWIEEGNRVHKFAAGDRFHVRMKEIYQKLEDLGEEMERA 534

Query: 266  GYIADTSFVLKEVGAEEKKQTIGYHSEKLAIAFGLITFPCERPIRVMKNLRVCGDCHNWI 87
            GY+ADTSFVL+EVG+EEK QTI YHSE+LAIAFGLI+ P  RPIR+MKNLRVCGDCHN I
Sbjct: 535  GYVADTSFVLREVGSEEKNQTIRYHSERLAIAFGLISIPLGRPIRIMKNLRVCGDCHNAI 594

Query: 86   KFVSKCTERTIIVRDNNRFHRFDGGTCS 3
            KF+SK + R IIVRDNNRFHRF+ G CS
Sbjct: 595  KFISKLSGRVIIVRDNNRFHRFEDGKCS 622


>ref|XP_002283419.2| PREDICTED: MATE efflux family protein 1 [Vitis vinifera]
          Length = 977

 Score =  400 bits (1028), Expect = e-109
 Identities = 197/268 (73%), Positives = 226/268 (84%)
 Frame = -1

Query: 806 PNFITFLGVMLVCSHAGMVEKGQFFFGLMKKYTIEPGAQHYACLVDLLGRAGKLQEALSV 627
           PNFITFL V+  CSHAG+VEKGQF+F LMK+Y IEPGAQHYA +VDLLGRAGKL++A+S+
Sbjct: 210 PNFITFLCVLYACSHAGLVEKGQFYFELMKEYGIEPGAQHYASMVDLLGRAGKLKDAVSI 269

Query: 626 IKEMPMQPTESVWGALMTGCRIHGNTELAAFAADKVFELGTVSSGMHVLLSNXXXXXXXX 447
           IK+MPM+PTESVWGAL+TGCRIHG+TELA+F AD+VFELG VSS                
Sbjct: 270 IKKMPMEPTESVWGALLTGCRIHGDTELASFVADRVFELGPVSSAA-----------GRY 318

Query: 446 XXXXXARKMLKDQGVKKETGLSWVEEGNRVNTFAAGDRTHPKSKQIFEKLEEIGEEMEQA 267
                ARKML+DQGVKKETGLSWVEEGNR++TFAAGDR+HP +K I++KLEE+GEEME+A
Sbjct: 319 EEAARARKMLRDQGVKKETGLSWVEEGNRIHTFAAGDRSHPYTKDIYKKLEELGEEMERA 378

Query: 266 GYIADTSFVLKEVGAEEKKQTIGYHSEKLAIAFGLITFPCERPIRVMKNLRVCGDCHNWI 87
           GYIADTSFVL+EV  EEK QTI YHSE+LAIAFGLI+FP ERPIRVMKNLRVCGDCH  I
Sbjct: 379 GYIADTSFVLQEVDGEEKNQTIRYHSERLAIAFGLISFPPERPIRVMKNLRVCGDCHTAI 438

Query: 86  KFVSKCTERTIIVRDNNRFHRFDGGTCS 3
           KF+SKC  RTIIVRDNNRFHRF+ G CS
Sbjct: 439 KFMSKCCGRTIIVRDNNRFHRFEDGNCS 466


>ref|XP_003625160.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
            gi|124360204|gb|ABN08217.1| Tetratricopeptide-like
            helical [Medicago truncatula] gi|355500175|gb|AES81378.1|
            Pentatricopeptide repeat-containing protein [Medicago
            truncatula]
          Length = 596

 Score =  393 bits (1010), Expect = e-107
 Identities = 184/267 (68%), Positives = 227/267 (85%)
 Frame = -1

Query: 803  NFITFLGVMLVCSHAGMVEKGQFFFGLMKKYTIEPGAQHYACLVDLLGRAGKLQEALSVI 624
            NFITFL V+  CSHAG+VEKG+++F LMK Y IEPG QHY+ +VDLLGRAGKL +A+ +I
Sbjct: 325  NFITFLCVLYACSHAGLVEKGKYYFELMKDYGIEPGTQHYSTMVDLLGRAGKLNDAVKLI 384

Query: 623  KEMPMQPTESVWGALMTGCRIHGNTELAAFAADKVFELGTVSSGMHVLLSNXXXXXXXXX 444
            +EMPM+PTESVWGAL+TGCR+HGNT+LA++ AD+V ELG+VSSG+HV+LSN         
Sbjct: 385  EEMPMEPTESVWGALLTGCRLHGNTKLASYVADRVSELGSVSSGLHVMLSNAYAAAGRWE 444

Query: 443  XXXXARKMLKDQGVKKETGLSWVEEGNRVNTFAAGDRTHPKSKQIFEKLEEIGEEMEQAG 264
                ARKM++D+G+KKETGLSWVEEGNR++TFAAGDR+H KS +I++KL+E+GEEM++AG
Sbjct: 445  EAAKARKMMRDRGIKKETGLSWVEEGNRIHTFAAGDRSHAKSVEIYDKLDELGEEMDKAG 504

Query: 263  YIADTSFVLKEVGAEEKKQTIGYHSEKLAIAFGLITFPCERPIRVMKNLRVCGDCHNWIK 84
            Y+ADTSFVLKEV  EEK ++I YHSE+LAIAFG ITFP  +PIRVMKNLRVCGDCH  IK
Sbjct: 505  YVADTSFVLKEVDGEEKSRSIRYHSERLAIAFGFITFPHGQPIRVMKNLRVCGDCHTAIK 564

Query: 83   FVSKCTERTIIVRDNNRFHRFDGGTCS 3
            F+SKCT R IIVRDNNRFHRF+ G C+
Sbjct: 565  FISKCTGRVIIVRDNNRFHRFEDGKCT 591


>ref|NP_200075.1| mitochondrial RNA editing factor 1 [Arabidopsis thaliana]
            gi|75180446|sp|Q9LTF4.1|PP429_ARATH RecName:
            Full=Putative pentatricopeptide repeat-containing protein
            At5g52630 gi|8953718|dbj|BAA98081.1| selenium-binding
            protein-like [Arabidopsis thaliana]
            gi|332008860|gb|AED96243.1| mitochondrial RNA editing
            factor 1 [Arabidopsis thaliana]
          Length = 588

 Score =  387 bits (994), Expect = e-105
 Identities = 188/268 (70%), Positives = 220/268 (82%)
 Frame = -1

Query: 806  PNFITFLGVMLVCSHAGMVEKGQFFFGLMKKYTIEPGAQHYACLVDLLGRAGKLQEALSV 627
            PNFITFL V+  CSHAG+V++G+++F  MK+  IEP  +HYA LVD+LGRAG+LQEAL V
Sbjct: 316  PNFITFLNVLNACSHAGLVDEGRYYFDQMKESRIEPTDKHYASLVDMLGRAGRLQEALEV 375

Query: 626  IKEMPMQPTESVWGALMTGCRIHGNTELAAFAADKVFELGTVSSGMHVLLSNXXXXXXXX 447
            I  MP+ PTESVWGAL+T C +H NTELAAFAADKVFELG VSSGMH+ LSN        
Sbjct: 376  ITNMPIDPTESVWGALLTSCTVHKNTELAAFAADKVFELGPVSSGMHISLSNAYAADGRF 435

Query: 446  XXXXXARKMLKDQGVKKETGLSWVEEGNRVNTFAAGDRTHPKSKQIFEKLEEIGEEMEQA 267
                 ARK+L+D+G KKETGLSWVEE N+V+TFAAG+R H KSK+I+EKL E+GEEME+A
Sbjct: 436  EDAAKARKLLRDRGEKKETGLSWVEERNKVHTFAAGERRHEKSKEIYEKLAELGEEMEKA 495

Query: 266  GYIADTSFVLKEVGAEEKKQTIGYHSEKLAIAFGLITFPCERPIRVMKNLRVCGDCHNWI 87
            GYIADTS+VL+EV  +EK QTI YHSE+LAIAFGLITFP +RPIRVMKNLRVCGDCHN I
Sbjct: 496  GYIADTSYVLREVDGDEKNQTIRYHSERLAIAFGLITFPADRPIRVMKNLRVCGDCHNAI 555

Query: 86   KFVSKCTERTIIVRDNNRFHRFDGGTCS 3
            KF+S CT R IIVRDNNRFHRF+ G CS
Sbjct: 556  KFMSVCTRRVIIVRDNNRFHRFEDGKCS 583