BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00036375
         (270 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABD28670.2| RNA-directed DNA polymerase (Reverse transcriptas...    87   1e-15
gb|ABN09154.1| RNA-directed DNA polymerase (Reverse transcriptas...    86   3e-15
gb|ABE87589.2| RNA-directed DNA polymerase (Reverse transcriptas...    80   2e-13
emb|CAA12932.1| reverse transcriptase [Pinus elliottii]                67   1e-09
emb|CAD45561.1| reverse transcriptase [Elaeis guineensis]              65   4e-09

>gb|ABD28670.2| RNA-directed DNA polymerase (Reverse transcriptase) [Medicago
           truncatula]
          Length = 642

 Score = 87.4 bits (215), Expect = 1e-15
 Identities = 42/89 (47%), Positives = 59/89 (66%)
 Frame = +2

Query: 2   ANRLTSIATGIICYEQHGFLKGRTGSTAIAMASELINDMHIKRRGGNAVIKLDISQAFDS 181
           A+RL  I   II  EQ GF++GR     IA+ SE IN +  K  GGN  +K+D+++AFD+
Sbjct: 271 ADRLAKILPSIISKEQRGFVQGRNIRDCIALTSEAINVLDNKSFGGNLALKIDVTKAFDT 330

Query: 182 LSWEFLFLVLNRFGFSSIFCDMIMKVLSS 268
           L+W+FL LVL  FGF+ +FC+ I  +L S
Sbjct: 331 LNWDFLLLVLKTFGFNELFCNWIKTILHS 359


>gb|ABN09154.1| RNA-directed DNA polymerase (Reverse transcriptase) [Medicago
           truncatula]
          Length = 528

 Score = 85.9 bits (211), Expect = 3e-15
 Identities = 42/89 (47%), Positives = 57/89 (64%)
 Frame = +2

Query: 2   ANRLTSIATGIICYEQHGFLKGRTGSTAIAMASELINDMHIKRRGGNAVIKLDISQAFDS 181
           A+RL  I   I+  EQ GF++GR     + +ASE IN +  K  GGN   K+DIS+AFD+
Sbjct: 210 ADRLAQIMPNIVSQEQRGFIQGRNIKDCVCLASEAINMLDQKSFGGNLAFKVDISKAFDT 269

Query: 182 LSWEFLFLVLNRFGFSSIFCDMIMKVLSS 268
           L+W+FL  VL +FGFS  FC+ I  +L S
Sbjct: 270 LNWKFLLKVLKQFGFSETFCNWIDAILQS 298


>gb|ABE87589.2| RNA-directed DNA polymerase (Reverse transcriptase); Ribonuclease
           H; Endonuclease/exonuclease/phosphatase [Medicago
           truncatula]
          Length = 1246

 Score = 80.1 bits (196), Expect = 2e-13
 Identities = 40/89 (44%), Positives = 55/89 (61%)
 Frame = +2

Query: 2   ANRLTSIATGIICYEQHGFLKGRTGSTAIAMASELINDMHIKRRGGNAVIKLDISQAFDS 181
           A+RL  I   II  EQ GF++ R  S  + +ASE IN +  ++ GGN  +K+DI++AFD+
Sbjct: 536 ADRLADITMRIISVEQRGFIRDRDISKCVILASEAINLLEKRQYGGNVALKVDIAKAFDT 595

Query: 182 LSWEFLFLVLNRFGFSSIFCDMIMKVLSS 268
           L W FL  VL RFGF   F   I+ +L S
Sbjct: 596 LDWNFLLAVLQRFGFDEKFVHWILVILQS 624


>emb|CAA12932.1| reverse transcriptase [Pinus elliottii]
          Length = 194

 Score = 67.4 bits (163), Expect = 1e-09
 Identities = 34/89 (38%), Positives = 57/89 (64%)
 Frame = +2

Query: 2   ANRLTSIATGIICYEQHGFLKGRTGSTAIAMASELINDMHIKRRGGNAVIKLDISQAFDS 181
           ANRL  I  GII  EQ G+++GR     I +A E+I+ +H ++  G  +I+LD+S+A+D 
Sbjct: 78  ANRLKIILPGIISQEQSGYVEGRQILDNILLAQEMIHSLHSRKVAG-MLIQLDLSKAYDK 136

Query: 182 LSWEFLFLVLNRFGFSSIFCDMIMKVLSS 268
           +SW +L  +L  FGFS  +   +++++ S
Sbjct: 137 VSWTYLEAILKAFGFSRPWIKWVLELIKS 165


>emb|CAD45561.1| reverse transcriptase [Elaeis guineensis]
          Length = 137

 Score = 65.5 bits (158), Expect = 4e-09
 Identities = 35/74 (47%), Positives = 46/74 (62%)
 Frame = +2

Query: 5   NRLTSIATGIICYEQHGFLKGRTGSTAIAMASELINDMHIKRRGGNAVIKLDISQAFDSL 184
           +RL SI   II   Q  F+KGR     I++A EL  + + K  G N +IKLD+ +A+D L
Sbjct: 22  DRLASILPLIISENQGAFVKGRNILENISLAQELTQEFNRKCYGHNVIIKLDMGKAYDRL 81

Query: 185 SWEFLFLVLNRFGF 226
            W+FLF VL RFGF
Sbjct: 82  EWDFLFQVLLRFGF 95