BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00035948
         (334 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002284545.2| PREDICTED: pentatricopeptide repeat-containi...   150   1e-34
ref|XP_003597735.1| Pentatricopeptide repeat-containing protein ...   149   2e-34
ref|XP_003546945.1| PREDICTED: putative pentatricopeptide repeat...   148   5e-34
ref|XP_002516017.1| pentatricopeptide repeat-containing protein,...   142   4e-32
ref|XP_004154387.1| PREDICTED: pentatricopeptide repeat-containi...   140   1e-31

>ref|XP_002284545.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Vitis vinifera]
          Length = 648

 Score =  150 bits (379), Expect = 1e-34
 Identities = 77/110 (70%), Positives = 88/110 (80%)
 Frame = +3

Query: 3   KCGDEESGRKVFDKILGRDVVLWNSMLAAYSQNGYSNEALALCREMGMTGLRLSEATLVT 182
           KCG   S R+VFDKIL RD VLWNSMLAAYSQNG+ +  L+LC EM +TGLR +EATLVT
Sbjct: 223 KCGCVGSAREVFDKILVRDAVLWNSMLAAYSQNGHPDACLSLCSEMVLTGLRPTEATLVT 282

Query: 183 VIAASSDIAALPRGREVHGFSLRHGFESQDKVNTAFVDMYAKCGAVWVAR 332
            I+AS+D AALP+GRE+HG S R  FES DKV TA VDMYAKCG+V VAR
Sbjct: 283 AISASADNAALPQGRELHGLSWRQEFESHDKVKTALVDMYAKCGSVRVAR 332



 Score = 71.6 bits (174), Expect = 6e-11
 Identities = 39/109 (35%), Positives = 58/109 (53%)
 Frame = +3

Query: 6   CGDEESGRKVFDKILGRDVVLWNSMLAAYSQNGYSNEALALCREMGMTGLRLSEATLVTV 185
           C    S R +FD+I   ++ LWN ++  Y+ NG    A+ L  +M   GL     T   V
Sbjct: 123 CDSLSSARLLFDRIPKHNIFLWNVLIRGYAWNGPYEAAVQLYYQMFDYGLVPDNFTFPFV 182

Query: 186 IAASSDIAALPRGREVHGFSLRHGFESQDKVNTAFVDMYAKCGAVWVAR 332
           + A + ++A+  GRE+H   ++ G+E    V  A +DMYAKCG V  AR
Sbjct: 183 LKACAALSAIEHGREIHEHVVQTGWEKDVFVGAALIDMYAKCGCVGSAR 231


>ref|XP_003597735.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|87240430|gb|ABD32288.1| Tetratricopeptide-like
           helical [Medicago truncatula]
           gi|355486783|gb|AES67986.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 620

 Score =  149 bits (377), Expect = 2e-34
 Identities = 70/109 (64%), Positives = 88/109 (80%)
 Frame = +3

Query: 3   KCGDEESGRKVFDKILGRDVVLWNSMLAAYSQNGYSNEALALCREMGMTGLRLSEATLVT 182
           KCG      +VFDKI+ RD VLWNSMLAAY+QNG+ +E+++LCREM   G+R +EATLVT
Sbjct: 195 KCGCVMDAGRVFDKIVVRDAVLWNSMLAAYAQNGHPDESISLCREMAANGVRPTEATLVT 254

Query: 183 VIAASSDIAALPRGREVHGFSLRHGFESQDKVNTAFVDMYAKCGAVWVA 329
           VI++S+D+A LP GRE+HGF  RHGF+S DKV TA +DMYAKCG+V VA
Sbjct: 255 VISSSADVACLPYGREIHGFGWRHGFQSNDKVKTALIDMYAKCGSVKVA 303



 Score = 75.1 bits (183), Expect = 6e-12
 Identities = 38/100 (38%), Positives = 59/100 (59%)
 Frame = +3

Query: 21  SGRKVFDKILGRDVVLWNSMLAAYSQNGYSNEALALCREMGMTGLRLSEATLVTVIAASS 200
           + R +FDKI  +++ LWN ++  Y+ NG  + A+ L  +M   GLR    TL  V+ A S
Sbjct: 100 NARNLFDKIPKQNLFLWNVLIRGYAWNGPHDNAIILYHKMLDYGLRPDNFTLPFVLKACS 159

Query: 201 DIAALPRGREVHGFSLRHGFESQDKVNTAFVDMYAKCGAV 320
            ++A+  GR +H + ++ G+E    V  A +DMYAKCG V
Sbjct: 160 ALSAIGEGRSIHEYVIKSGWERDLFVGAALIDMYAKCGCV 199


>ref|XP_003546945.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Glycine max]
          Length = 631

 Score =  148 bits (373), Expect = 5e-34
 Identities = 71/109 (65%), Positives = 86/109 (78%)
 Frame = +3

Query: 3   KCGDEESGRKVFDKILGRDVVLWNSMLAAYSQNGYSNEALALCREMGMTGLRLSEATLVT 182
           KCG     R VFDKI+ RD VLWNSMLAAY+QNG+ +E+L+LC EM   G+R +EATLVT
Sbjct: 206 KCGCVVDARHVFDKIVDRDAVLWNSMLAAYAQNGHPDESLSLCCEMAAKGVRPTEATLVT 265

Query: 183 VIAASSDIAALPRGREVHGFSLRHGFESQDKVNTAFVDMYAKCGAVWVA 329
           VI++S+DIA LP GRE+HGF  RHGF+  DKV TA +DMYAKCG+V VA
Sbjct: 266 VISSSADIACLPHGREIHGFGWRHGFQYNDKVKTALIDMYAKCGSVKVA 314



 Score = 73.6 bits (179), Expect = 2e-11
 Identities = 41/109 (37%), Positives = 59/109 (54%)
 Frame = +3

Query: 6   CGDEESGRKVFDKILGRDVVLWNSMLAAYSQNGYSNEALALCREMGMTGLRLSEATLVTV 185
           C    +   +FDKI   ++ LWN ++ AY+ NG    A++L  +M   GL+    TL  V
Sbjct: 106 CNSLRNAHHLFDKIPKGNLFLWNVLIRAYAWNGPHETAISLYHQMLEYGLKPDNFTLPFV 165

Query: 186 IAASSDIAALPRGREVHGFSLRHGFESQDKVNTAFVDMYAKCGAVWVAR 332
           + A S ++ +  GR +H   +R G+E    V  A VDMYAKCG V  AR
Sbjct: 166 LKACSALSTIGEGRVIHERVIRSGWERDVFVGAALVDMYAKCGCVVDAR 214


>ref|XP_002516017.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223544922|gb|EEF46437.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 472

 Score =  142 bits (357), Expect = 4e-32
 Identities = 70/110 (63%), Positives = 87/110 (79%)
 Frame = +3

Query: 3   KCGDEESGRKVFDKILGRDVVLWNSMLAAYSQNGYSNEALALCREMGMTGLRLSEATLVT 182
           KCG  ++ R+VF K   RD VLWNSMLAAYSQNG  +++LALC EM + G+R +EATLVT
Sbjct: 235 KCGCVDNAREVFHKFPVRDAVLWNSMLAAYSQNGKPDKSLALCSEMVLAGVRPTEATLVT 294

Query: 183 VIAASSDIAALPRGREVHGFSLRHGFESQDKVNTAFVDMYAKCGAVWVAR 332
           VI+AS+DIAALP+GRE+HGF+ R  FES DKV T  +DMYAKCG + VA+
Sbjct: 295 VISASADIAALPQGRELHGFAWRRRFESNDKVKTTLIDMYAKCGTMKVAQ 344



 Score = 61.6 bits (148), Expect = 6e-08
 Identities = 37/109 (33%), Positives = 56/109 (51%)
 Frame = +3

Query: 6   CGDEESGRKVFDKILGRDVVLWNSMLAAYSQNGYSNEALALCREMGMTGLRLSEATLVTV 185
           C      R +FDKI  R++ LWN ++  Y+  G    ++ L  ++   GL     T   V
Sbjct: 135 CNSLCEARLLFDKIPKRNLFLWNVLIRGYAWYGPYEASIQLYYKIFDYGLVPDNFTFPFV 194

Query: 186 IAASSDIAALPRGREVHGFSLRHGFESQDKVNTAFVDMYAKCGAVWVAR 332
           + A S ++A+  GR +H   +R G+E    V  A +DMY+KCG V  AR
Sbjct: 195 LKACSALSAIEDGRLIHEQVMRSGWERDVFVGAALIDMYSKCGCVDNAR 243


>ref|XP_004154387.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
           gi|449522468|ref|XP_004168248.1| PREDICTED:
           pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
          Length = 574

 Score =  140 bits (353), Expect = 1e-31
 Identities = 71/110 (64%), Positives = 83/110 (75%)
 Frame = +3

Query: 3   KCGDEESGRKVFDKILGRDVVLWNSMLAAYSQNGYSNEALALCREMGMTGLRLSEATLVT 182
           KCG  ES R+VFDKI  RDVV WNSMLA YSQNG  +E+LALCR M   GL+ +E T V 
Sbjct: 149 KCGCVESARQVFDKIDERDVVCWNSMLATYSQNGQPDESLALCRVMAFNGLKPTEGTFVI 208

Query: 183 VIAASSDIAALPRGREVHGFSLRHGFESQDKVNTAFVDMYAKCGAVWVAR 332
            IAAS+D   LP+G+E+HG+S RHGFES DKV TA +DMYAK G+V VAR
Sbjct: 209 SIAASADNGLLPQGKELHGYSWRHGFESNDKVKTALMDMYAKSGSVNVAR 258



 Score = 73.2 bits (178), Expect = 2e-11
 Identities = 40/109 (36%), Positives = 60/109 (55%)
 Frame = +3

Query: 6   CGDEESGRKVFDKILGRDVVLWNSMLAAYSQNGYSNEALALCREMGMTGLRLSEATLVTV 185
           C    +   +FD+I  R++ LWN M+  Y+ NG    A++L  +M   GL   + T   V
Sbjct: 49  CNSLTNAHLLFDRISKRNLFLWNVMIRGYAWNGPYELAISLYYQMRDYGLVPDKFTFPFV 108

Query: 186 IAASSDIAALPRGREVHGFSLRHGFESQDKVNTAFVDMYAKCGAVWVAR 332
           + A S ++A+  G+++H   +R G ES   V  A +DMYAKCG V  AR
Sbjct: 109 LKACSALSAMEEGKKIHKDVIRSGLESDVFVGAALIDMYAKCGCVESAR 157