BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00035920
         (317 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002318245.1| predicted protein [Populus trichocarpa] gi|2...   121   7e-26
ref|XP_003528083.1| PREDICTED: pentatricopeptide repeat-containi...   118   6e-25
ref|XP_004139431.1| PREDICTED: pentatricopeptide repeat-containi...   117   8e-25
ref|XP_002282912.2| PREDICTED: pentatricopeptide repeat-containi...   117   8e-25
emb|CBI16398.3| unnamed protein product [Vitis vinifera]              117   8e-25

>ref|XP_002318245.1| predicted protein [Populus trichocarpa] gi|222858918|gb|EEE96465.1|
           predicted protein [Populus trichocarpa]
          Length = 513

 Score =  121 bits (303), Expect = 7e-26
 Identities = 49/104 (47%), Positives = 75/104 (72%)
 Frame = +3

Query: 6   LDFGKWVHSRISCSGLDENVAVSASLIDMYAKCGCVETAYEVFSKLDHRNVSTWNALITG 185
           LD+G+WVH  I    +  ++ +  +++DMYAKCGC+E + ++F+ + H+NV TWNAL+ G
Sbjct: 249 LDYGRWVHEHIDRKAIKWDIQIGTAMVDMYAKCGCIEMSMQIFNGMPHKNVLTWNALLNG 308

Query: 186 LAVNGIAHAALEAFTEMLRLETKPDRITFLGMLMACCHGGLVEE 317
           LA++G A+  LE F EM+R+  +P+ +TFL +L ACCH GLV E
Sbjct: 309 LAMHGHAYKVLELFEEMVRVGMRPNEVTFLAILTACCHCGLVNE 352



 Score = 68.2 bits (165), Expect = 7e-10
 Identities = 35/103 (33%), Positives = 54/103 (52%)
 Frame = +3

Query: 6   LDFGKWVHSRISCSGLDENVAVSASLIDMYAKCGCVETAYEVFSKLDHRNVSTWNALITG 185
           L  GK +H     S     + VS +L+DMY KCGC+  A +VF +L  +++ +W ++I+G
Sbjct: 148 LSVGKGIHGLSFKSAFGVGLEVSNALMDMYVKCGCLPGAKQVFDELAEKDIVSWTSIISG 207

Query: 186 LAVNGIAHAALEAFTEMLRLETKPDRITFLGMLMACCHGGLVE 314
           L        ALE F +M     +PD I    +L AC   G ++
Sbjct: 208 LVQCNCPKEALELFQDMQSSGIEPDGIILTSVLSACARLGALD 250


>ref|XP_003528083.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Glycine max]
          Length = 568

 Score =  118 bits (295), Expect = 6e-25
 Identities = 55/104 (52%), Positives = 77/104 (74%)
 Frame = +3

Query: 6   LDFGKWVHSRISCSGLDENVAVSASLIDMYAKCGCVETAYEVFSKLDHRNVSTWNALITG 185
           L+ G WVH+ IS  G++  V++ ++LIDMY++CG ++ + +VF ++ HRNV TW ALI G
Sbjct: 212 LELGIWVHAFISRIGVNLTVSLGSALIDMYSRCGDIDRSVKVFDEMPHRNVVTWTALING 271

Query: 186 LAVNGIAHAALEAFTEMLRLETKPDRITFLGMLMACCHGGLVEE 317
           LAV+G    ALEAF +M+    KPDRI F+G+L+AC HGGLVEE
Sbjct: 272 LAVHGRGREALEAFYDMVESGLKPDRIAFMGVLVACSHGGLVEE 315


>ref|XP_004139431.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g38010-like [Cucumis sativus]
           gi|449521082|ref|XP_004167560.1| PREDICTED:
           pentatricopeptide repeat-containing protein
           At4g38010-like [Cucumis sativus]
          Length = 583

 Score =  117 bits (294), Expect = 8e-25
 Identities = 51/104 (49%), Positives = 71/104 (68%)
 Frame = +3

Query: 6   LDFGKWVHSRISCSGLDENVAVSASLIDMYAKCGCVETAYEVFSKLDHRNVSTWNALITG 185
           LDFG WVH  I+  G+  ++ +  +++DMYAKCGC+E A ++F  +  RN  TWNAL+ G
Sbjct: 319 LDFGTWVHEYINQRGIKWDIHIGTAIVDMYAKCGCIEMALKIFYSMSQRNTFTWNALLCG 378

Query: 186 LAVNGIAHAALEAFTEMLRLETKPDRITFLGMLMACCHGGLVEE 317
           LA++G+ H AL  F  M+    KP+ ITFL +L ACCH GLV+E
Sbjct: 379 LAMHGLVHEALNLFEVMIISGVKPNEITFLAILTACCHCGLVDE 422



 Score = 58.9 bits (141), Expect = 4e-07
 Identities = 33/104 (31%), Positives = 52/104 (50%)
 Frame = +3

Query: 3   ELDFGKWVHSRISCSGLDENVAVSASLIDMYAKCGCVETAYEVFSKLDHRNVSTWNALIT 182
           +L  GK +H  I       N+ +  +++DMY K GC   A  +F +L  R++ +W  +IT
Sbjct: 218 DLCTGKGIHGVIE-RRFKVNLVLGNAMLDMYVKNGCFYEAKNIFDELPTRDIVSWTIMIT 276

Query: 183 GLAVNGIAHAALEAFTEMLRLETKPDRITFLGMLMACCHGGLVE 314
           GL  +     +LE F+ M  L   PD I    +L AC   G ++
Sbjct: 277 GLVQSDHPKQSLELFSMMRTLGISPDAIILTSVLSACASLGTLD 320


>ref|XP_002282912.2| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
           mitochondrial-like [Vitis vinifera]
          Length = 642

 Score =  117 bits (294), Expect = 8e-25
 Identities = 56/104 (53%), Positives = 71/104 (68%)
 Frame = +3

Query: 6   LDFGKWVHSRISCSGLDENVAVSASLIDMYAKCGCVETAYEVFSKLDHRNVSTWNALITG 185
           LD G W+H  I    L  NVA+  +LIDMYAKCG +  A +VF +L  RN  TW A+I+G
Sbjct: 356 LDVGIWIHHYIEKHELSLNVALGTALIDMYAKCGKITKAIQVFQELPGRNSLTWTAIISG 415

Query: 186 LAVNGIAHAALEAFTEMLRLETKPDRITFLGMLMACCHGGLVEE 317
           LA++G AH A+  F+EM+     PD +TFLG+L ACCHGGLVEE
Sbjct: 416 LALHGNAHGAIAYFSEMIDNSVMPDEVTFLGLLSACCHGGLVEE 459



 Score = 59.7 bits (143), Expect = 2e-07
 Identities = 36/135 (26%), Positives = 60/135 (44%), Gaps = 31/135 (22%)
 Frame = +3

Query: 3   ELDFGKWVHSRISCSGLDENVAVSASLIDMYAKCGCVETAYEVFSKLDHRNVSTWNALIT 182
           +LD G+  H  I  +GL   V ++ +L+DMY KCG +E+A ++F  + ++ + +W  ++ 
Sbjct: 223 DLDLGRESHCYIEENGLKLTVPLANALMDMYMKCGNLESARKLFDSMTNKTMVSWTTMVV 282

Query: 183 GLA--------------------------VNGIAHA-----ALEAFTEMLRLETKPDRIT 269
           G A                          + G  HA     AL  F EM  +   PD +T
Sbjct: 283 GYAQSGLLDMAWKLFDEMPDKDVVPWNAMIGGYVHANRGKEALALFNEMQAMNINPDEVT 342

Query: 270 FLGMLMACCHGGLVE 314
            +  L AC   G ++
Sbjct: 343 MVSCLSACSQLGALD 357



 Score = 57.8 bits (138), Expect = 9e-07
 Identities = 27/82 (32%), Positives = 48/82 (58%)
 Frame = +3

Query: 48  GLDENVAVSASLIDMYAKCGCVETAYEVFSKLDHRNVSTWNALITGLAVNGIAHAALEAF 227
           G D ++ VS ++I +   CG ++ A ++F K   R++ +WN++I G    G A+ AL  +
Sbjct: 137 GFDSDIFVSNAVIHLLVSCGDLDGARKMFDKSCVRDLVSWNSMINGYVRRGWAYEALNFY 196

Query: 228 TEMLRLETKPDRITFLGMLMAC 293
            EM     KPD +T +G++ +C
Sbjct: 197 REMKVEGIKPDEVTMIGVVSSC 218


>emb|CBI16398.3| unnamed protein product [Vitis vinifera]
          Length = 608

 Score =  117 bits (294), Expect = 8e-25
 Identities = 56/104 (53%), Positives = 71/104 (68%)
 Frame = +3

Query: 6   LDFGKWVHSRISCSGLDENVAVSASLIDMYAKCGCVETAYEVFSKLDHRNVSTWNALITG 185
           LD G W+H  I    L  NVA+  +LIDMYAKCG +  A +VF +L  RN  TW A+I+G
Sbjct: 328 LDVGIWIHHYIEKHELSLNVALGTALIDMYAKCGKITKAIQVFQELPGRNSLTWTAIISG 387

Query: 186 LAVNGIAHAALEAFTEMLRLETKPDRITFLGMLMACCHGGLVEE 317
           LA++G AH A+  F+EM+     PD +TFLG+L ACCHGGLVEE
Sbjct: 388 LALHGNAHGAIAYFSEMIDNSVMPDEVTFLGLLSACCHGGLVEE 431