BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00035911
         (274 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002531657.1| X-ray repair cross complementing protein 3, ...   108   5e-22
emb|CBI17834.3| unnamed protein product [Vitis vinifera]              100   2e-19
ref|XP_002268968.1| PREDICTED: DNA repair protein XRCC3 homolog ...   100   2e-19
emb|CAN60498.1| hypothetical protein VITISV_027869 [Vitis vinifera]   100   2e-19
ref|XP_004150781.1| PREDICTED: DNA repair protein XRCC3 homolog ...    97   1e-18

>ref|XP_002531657.1| X-ray repair cross complementing protein 3, xrcc3, putative
           [Ricinus communis] gi|223528715|gb|EEF30727.1| X-ray
           repair cross complementing protein 3, xrcc3, putative
           [Ricinus communis]
          Length = 301

 Score =  108 bits (270), Expect = 5e-22
 Identities = 55/90 (61%), Positives = 63/90 (70%), Gaps = 2/90 (2%)
 Frame = +3

Query: 6   MKPINPV--NLSTSKCTTNCPALDKFLSGGIPTNSITELVSESSCGKTXXXXXXXXXXXX 179
           MKP N V   + T KCT  CP LD+ L+GGIP NSITE+V+ES  GKT            
Sbjct: 1   MKPENLVFQPIPTQKCTLGCPILDRCLNGGIPCNSITEIVAESGTGKTQLCLQLSLYAQL 60

Query: 180 PLTRGGLSSSSLYIHTEFPFPFRRLHQLSH 269
           PL+ GGLS+SSLY+HTEFPFPFRRLHQLSH
Sbjct: 61  PLSLGGLSASSLYLHTEFPFPFRRLHQLSH 90


>emb|CBI17834.3| unnamed protein product [Vitis vinifera]
          Length = 260

 Score = 99.8 bits (247), Expect = 2e-19
 Identities = 48/83 (57%), Positives = 58/83 (69%)
 Frame = +3

Query: 18  NPVNLSTSKCTTNCPALDKFLSGGIPTNSITELVSESSCGKTXXXXXXXXXXXXPLTRGG 197
           NP+ L+T KCT  CP LD+ L+GG+P NSITELV+ES  GKT            P + GG
Sbjct: 9   NPLALTTQKCTLGCPILDRCLAGGVPCNSITELVAESGSGKTQLCLQLVLSAQLPTSLGG 68

Query: 198 LSSSSLYIHTEFPFPFRRLHQLS 266
           L++SSLYIH+EFPFP RRL QLS
Sbjct: 69  LAASSLYIHSEFPFPSRRLQQLS 91


>ref|XP_002268968.1| PREDICTED: DNA repair protein XRCC3 homolog [Vitis vinifera]
          Length = 300

 Score = 99.8 bits (247), Expect = 2e-19
 Identities = 48/83 (57%), Positives = 58/83 (69%)
 Frame = +3

Query: 18  NPVNLSTSKCTTNCPALDKFLSGGIPTNSITELVSESSCGKTXXXXXXXXXXXXPLTRGG 197
           NP+ L+T KCT  CP LD+ L+GG+P NSITELV+ES  GKT            P + GG
Sbjct: 9   NPLALTTQKCTLGCPILDRCLAGGVPCNSITELVAESGSGKTQLCLQLVLSAQLPTSLGG 68

Query: 198 LSSSSLYIHTEFPFPFRRLHQLS 266
           L++SSLYIH+EFPFP RRL QLS
Sbjct: 69  LAASSLYIHSEFPFPSRRLQQLS 91


>emb|CAN60498.1| hypothetical protein VITISV_027869 [Vitis vinifera]
          Length = 2077

 Score = 99.8 bits (247), Expect = 2e-19
 Identities = 48/83 (57%), Positives = 58/83 (69%)
 Frame = +3

Query: 18   NPVNLSTSKCTTNCPALDKFLSGGIPTNSITELVSESSCGKTXXXXXXXXXXXXPLTRGG 197
            NP+ L+T KCT  CP LD+ L+GG+P NSITELV+ES  GKT            P + GG
Sbjct: 1786 NPLALTTQKCTLGCPILDRCLAGGVPCNSITELVAESGSGKTQLCLQLVLSAQLPTSLGG 1845

Query: 198  LSSSSLYIHTEFPFPFRRLHQLS 266
            L++SSLYIH+EFPFP RRL QLS
Sbjct: 1846 LAASSLYIHSEFPFPSRRLQQLS 1868


>ref|XP_004150781.1| PREDICTED: DNA repair protein XRCC3 homolog [Cucumis sativus]
           gi|449506730|ref|XP_004162832.1| PREDICTED: DNA repair
           protein XRCC3 homolog [Cucumis sativus]
          Length = 294

 Score = 97.1 bits (240), Expect = 1e-18
 Identities = 47/89 (52%), Positives = 61/89 (68%), Gaps = 2/89 (2%)
 Frame = +3

Query: 6   MKPINPVNL--STSKCTTNCPALDKFLSGGIPTNSITELVSESSCGKTXXXXXXXXXXXX 179
           M P N ++L  +T KCT  CP +D+ + GG+  +S+TE+V+ES CGKT            
Sbjct: 1   MTPENLLHLLQTTQKCTFGCPIIDRSVGGGVACSSLTEIVAESGCGKTQLCLQLSLCAQL 60

Query: 180 PLTRGGLSSSSLYIHTEFPFPFRRLHQLS 266
           PL+ GGL++SSLYIHTEFPFPFRRL QLS
Sbjct: 61  PLSNGGLNASSLYIHTEFPFPFRRLQQLS 89