BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00035910
         (228 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002531657.1| X-ray repair cross complementing protein 3, ...    97   1e-18
ref|NP_200554.1| DNA repair protein XRCC3-like protein [Arabidop...    93   3e-17
ref|XP_004150781.1| PREDICTED: DNA repair protein XRCC3 homolog ...    92   3e-17
ref|XP_002324475.1| predicted protein [Populus trichocarpa] gi|2...    92   4e-17
emb|CBI17834.3| unnamed protein product [Vitis vinifera]               88   6e-16

>ref|XP_002531657.1| X-ray repair cross complementing protein 3, xrcc3, putative
           [Ricinus communis] gi|223528715|gb|EEF30727.1| X-ray
           repair cross complementing protein 3, xrcc3, putative
           [Ricinus communis]
          Length = 301

 Score = 97.1 bits (240), Expect = 1e-18
 Identities = 50/78 (64%), Positives = 65/78 (83%), Gaps = 4/78 (5%)
 Frame = -2

Query: 227 RLEAFLQTS----PVRLIVIDSIAALFRSEFDNTSKDLKRRSLYFFRIAAKLKMYASKFD 60
           ++E+FL  S    PVRLIVIDS+AALFRSEF+NT+ DLKRRS  FF+I+AKL+  A +F+
Sbjct: 136 KIESFLVYSKTHLPVRLIVIDSVAALFRSEFENTATDLKRRSALFFKISAKLRALAWRFN 195

Query: 59  LAVLVTNQVVDVIGNGDG 6
           LAV+V+NQVVD +G+GDG
Sbjct: 196 LAVVVSNQVVDFVGSGDG 213


>ref|NP_200554.1| DNA repair protein XRCC3-like protein [Arabidopsis thaliana]
           gi|30696870|ref|NP_851202.1| DNA repair protein
           XRCC3-like protein [Arabidopsis thaliana]
           gi|55583983|sp|Q9FKM5.1|XRCC3_ARATH RecName: Full=DNA
           repair protein XRCC3 homolog; AltName: Full=X-ray repair
           cross-complementing protein 3 homolog; Short=AtXRCC3
           gi|9758307|dbj|BAB08781.1| unnamed protein product
           [Arabidopsis thaliana] gi|15425729|dbj|BAB64342.1|
           AtXRCC3alpha [Arabidopsis thaliana]
           gi|16444953|dbj|BAB70684.1| AtXRCC3beta [Arabidopsis
           thaliana] gi|19571703|emb|CAD27641.1| Rad51B protein
           [Arabidopsis thaliana] gi|19571705|emb|CAD27642.1|
           Rad51B protein [Arabidopsis thaliana]
           gi|20384750|gb|AAK54457.1| DNA repair protein XRCC3
           [Arabidopsis thaliana] gi|109946499|gb|ABG48428.1|
           At5g57450 [Arabidopsis thaliana]
           gi|332009520|gb|AED96903.1| DNA repair protein
           XRCC3-like protein [Arabidopsis thaliana]
           gi|332009521|gb|AED96904.1| DNA repair protein
           XRCC3-like protein [Arabidopsis thaliana]
          Length = 304

 Score = 92.8 bits (229), Expect = 3e-17
 Identities = 45/78 (57%), Positives = 60/78 (76%), Gaps = 4/78 (5%)
 Frame = -2

Query: 227 RLEAFLQTS----PVRLIVIDSIAALFRSEFDNTSKDLKRRSLYFFRIAAKLKMYASKFD 60
           R++ F+  S    P++LIV+DS+AALFRSEFDNT  DLK+RS  FF+I+ KLK  ASKFD
Sbjct: 133 RIDGFVGNSKTRFPLKLIVLDSVAALFRSEFDNTPSDLKKRSSLFFKISGKLKQLASKFD 192

Query: 59  LAVLVTNQVVDVIGNGDG 6
           LA+++TNQV D++   DG
Sbjct: 193 LAIVITNQVTDLVETSDG 210


>ref|XP_004150781.1| PREDICTED: DNA repair protein XRCC3 homolog [Cucumis sativus]
           gi|449506730|ref|XP_004162832.1| PREDICTED: DNA repair
           protein XRCC3 homolog [Cucumis sativus]
          Length = 294

 Score = 92.4 bits (228), Expect = 3e-17
 Identities = 44/65 (67%), Positives = 56/65 (86%)
 Frame = -2

Query: 200 PVRLIVIDSIAALFRSEFDNTSKDLKRRSLYFFRIAAKLKMYASKFDLAVLVTNQVVDVI 21
           P+RLIVIDSIAALFRS+F+NT  DLKRRS  FF+I+ KLK+ A K+ LAV++TNQVVD++
Sbjct: 136 PIRLIVIDSIAALFRSDFNNTPSDLKRRSSLFFKISGKLKLLAKKYSLAVVLTNQVVDLM 195

Query: 20  GNGDG 6
           G+ DG
Sbjct: 196 GSSDG 200


>ref|XP_002324475.1| predicted protein [Populus trichocarpa] gi|222865909|gb|EEF03040.1|
           predicted protein [Populus trichocarpa]
          Length = 290

 Score = 92.0 bits (227), Expect = 4e-17
 Identities = 46/78 (58%), Positives = 64/78 (82%), Gaps = 4/78 (5%)
 Frame = -2

Query: 227 RLEAFLQTS----PVRLIVIDSIAALFRSEFDNTSKDLKRRSLYFFRIAAKLKMYASKFD 60
           ++E+FL+ S    PVR+IVIDS+AALFR+EF+NT+ DL RRS  FF+I+ KLK +A +F+
Sbjct: 123 QVESFLENSKTRLPVRVIVIDSMAALFRAEFENTASDLIRRSSLFFKISGKLKEFAKRFN 182

Query: 59  LAVLVTNQVVDVIGNGDG 6
           L VLVTNQV+DV+ +G+G
Sbjct: 183 LVVLVTNQVMDVVDSGEG 200


>emb|CBI17834.3| unnamed protein product [Vitis vinifera]
          Length = 260

 Score = 88.2 bits (217), Expect = 6e-16
 Identities = 45/65 (69%), Positives = 51/65 (78%)
 Frame = -2

Query: 200 PVRLIVIDSIAALFRSEFDNTSKDLKRRSLYFFRIAAKLKMYASKFDLAVLVTNQVVDVI 21
           PVRLIVIDSIAALFR EF+NT  DLKRRS  FF+I+ KLK  A +F LAV+VTNQVVD +
Sbjct: 102 PVRLIVIDSIAALFRGEFENTPFDLKRRSSLFFKISGKLKALAERFGLAVVVTNQVVDFV 161

Query: 20  GNGDG 6
           G   G
Sbjct: 162 GQAGG 166