BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00035856
         (558 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002275085.1| PREDICTED: pentatricopeptide repeat-containi...   206   2e-51
ref|XP_002531291.1| pentatricopeptide repeat-containing protein,...   185   5e-45
ref|XP_002328495.1| predicted protein [Populus trichocarpa] gi|2...   181   5e-44
ref|XP_002884467.1| pentatricopeptide repeat-containing protein ...   168   5e-40
ref|NP_187126.1| pentatricopeptide repeat-containing protein [Ar...   164   7e-39

>ref|XP_002275085.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04750,
           mitochondrial-like [Vitis vinifera]
          Length = 654

 Score =  206 bits (524), Expect = 2e-51
 Identities = 107/185 (57%), Positives = 130/185 (70%)
 Frame = -3

Query: 556 ILLFNYHTLTPNLFIYNMMISALSFSTTQSFTIYQSMLQLHIYPDKHXXXXXXXXXXXXS 377
           +LLF +HT  PNL+IYN MISALS S  QSF  Y S+L   IYP++             S
Sbjct: 85  VLLFRHHTPHPNLYIYNTMISALSLSLNQSFAFYNSLLSSCIYPNRSTFLFLLQASKFLS 144

Query: 376 QGKQIHNHAIITGFKSYGYLQNSLIKMYSEYGQMNLAHQVLQQMAQQDVVSFNILIYGYA 197
           Q  QIH HAIITG   YGYLQN+L+K+Y E  +M LA+QV QQMA  D VSFNI+I+GYA
Sbjct: 145 QVMQIHCHAIITGSFYYGYLQNTLMKIYLENEKMGLAYQVFQQMAAPDAVSFNIMIFGYA 204

Query: 196 RKGCSVEALQLFHEMVFKGIDPDEFTMVGLLMSCGRLSDKRLGKSIHAWITRRELYGARN 17
           +KG ++EAL+  HEMV  G+ PDEFTM+GLL+ CGRL D +LGKS+HAWI RR L  + N
Sbjct: 205 KKGHNIEALKFLHEMVGLGLKPDEFTMLGLLICCGRLGDAQLGKSVHAWIERRGLIKSSN 264

Query: 16  LILLN 2
           LIL N
Sbjct: 265 LILNN 269



 Score = 67.8 bits (164), Expect = 1e-09
 Identities = 31/94 (32%), Positives = 55/94 (58%)
 Frame = -3

Query: 313 NSLIKMYSEYGQMNLAHQVLQQMAQQDVVSFNILIYGYARKGCSVEALQLFHEMVFKGID 134
           N++I  Y++ G + +AH   + M  +D+VS+N +I GYA+KG  +   +LF  MV + I 
Sbjct: 300 NTMIAGYAKVGNLEIAHNFFEDMPCRDLVSWNSIIAGYAQKGDCLMVQRLFENMVAENIW 359

Query: 133 PDEFTMVGLLMSCGRLSDKRLGKSIHAWITRREL 32
           PD  T++ L+ +   +     G+ IH W+ R ++
Sbjct: 360 PDFVTIINLVSAAAEIGALHHGRWIHGWVVRMQM 393


>ref|XP_002531291.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223529124|gb|EEF31104.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 517

 Score =  185 bits (469), Expect = 5e-45
 Identities = 96/185 (51%), Positives = 127/185 (68%)
 Frame = -3

Query: 556 ILLFNYHTLTPNLFIYNMMISALSFSTTQSFTIYQSMLQLHIYPDKHXXXXXXXXXXXXS 377
           ++LFN++T  PNL+IYN MISALS +T Q   +Y SML   I PDKH            S
Sbjct: 85  LILFNHYTPYPNLYIYNTMISALSSATAQP--LYNSMLSTGIGPDKHTLLYLLHSARHVS 142

Query: 376 QGKQIHNHAIITGFKSYGYLQNSLIKMYSEYGQMNLAHQVLQQMAQQDVVSFNILIYGYA 197
           + KQ+  HAII G  +Y YLQNSLIK+Y E G   LAH++ +QM   DVVSFNI+I G A
Sbjct: 143 EVKQVQCHAIILGLSTYRYLQNSLIKVYLENGLFCLAHKIFRQMPAPDVVSFNIMITGCA 202

Query: 196 RKGCSVEALQLFHEMVFKGIDPDEFTMVGLLMSCGRLSDKRLGKSIHAWITRRELYGARN 17
           ++GC +EA+QL ++M+   + PDEFTM+GLL+SCG+L + R GK++HAWI RR+   + N
Sbjct: 203 KQGCGLEAIQLLYDMMALDLKPDEFTMLGLLVSCGKLGEARFGKTVHAWIERRKSITSSN 262

Query: 16  LILLN 2
           LIL N
Sbjct: 263 LILGN 267



 Score = 56.6 bits (135), Expect = 3e-06
 Identities = 31/94 (32%), Positives = 52/94 (55%)
 Frame = -3

Query: 376 QGKQIHNHAIITGFKSYGYLQNSLIKMYSEYGQMNLAHQVLQQMAQQDVVSFNILIYGYA 197
           QG+  H   I    K    L ++LI MY + G +N A  +  ++ ++DV+ +  +I G+A
Sbjct: 378 QGRWAHGWVIRMQIKIDAVLGSALIDMYCKCGSINNAFLIFNEIIEKDVILWTTMITGFA 437

Query: 196 RKGCSVEALQLFHEMVFKGIDPDEFTMVGLLMSC 95
             G   +AL+LF+EM    + P+E T V +L +C
Sbjct: 438 FHGYGSKALELFYEMQ-ANVTPNEITFVSVLAAC 470


>ref|XP_002328495.1| predicted protein [Populus trichocarpa] gi|222838210|gb|EEE76575.1|
           predicted protein [Populus trichocarpa]
          Length = 580

 Score =  181 bits (460), Expect = 5e-44
 Identities = 94/186 (50%), Positives = 126/186 (67%), Gaps = 1/186 (0%)
 Frame = -3

Query: 556 ILLFNYHTLTPNLFIYNMMISALS-FSTTQSFTIYQSMLQLHIYPDKHXXXXXXXXXXXX 380
           I LFN+ T  PNLFIYN +ISA S     +SF +Y  +L     PDK             
Sbjct: 20  ITLFNHFTPNPNLFIYNTLISAFSSLKKIESFYLYNVLLSSGECPDKQTLLYLLQAVNFI 79

Query: 379 SQGKQIHNHAIITGFKSYGYLQNSLIKMYSEYGQMNLAHQVLQQMAQQDVVSFNILIYGY 200
           SQ KQIH  AI+TG  S+GYLQN+LIK+Y E G + LAHQV ++M   D+VSFN++I GY
Sbjct: 80  SQVKQIHCQAIVTGLFSFGYLQNTLIKVYLENGLVRLAHQVFEKMPSPDIVSFNVMIVGY 139

Query: 199 ARKGCSVEALQLFHEMVFKGIDPDEFTMVGLLMSCGRLSDKRLGKSIHAWITRRELYGAR 20
           A+KG  +EA++LFHEMV  G++PDEFT++GLL+SCG+L + + GK++H W+ RR+   + 
Sbjct: 140 AKKGFGLEAMRLFHEMVGLGLEPDEFTILGLLVSCGQLGNVKFGKAVHGWMERRKPTISS 199

Query: 19  NLILLN 2
           NLIL N
Sbjct: 200 NLILGN 205


>ref|XP_002884467.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata] gi|297330307|gb|EFH60726.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 657

 Score =  168 bits (426), Expect = 5e-40
 Identities = 88/185 (47%), Positives = 119/185 (64%), Gaps = 1/185 (0%)
 Frame = -3

Query: 553 LLFNYHTLTPNLFIYNMMISALSFSTTQSFTIYQSMLQLHIYPDKHXXXXXXXXXXXXSQ 374
           LLF   T  PN+F+YN MISA+S S  + F +Y SM++  + PD+             S+
Sbjct: 88  LLFLDFTPNPNVFVYNTMISAVSSSKNECFGLYSSMIRYRVSPDRQTFLHLMKASSFLSE 147

Query: 373 GKQIHNHAIITGFKSYG-YLQNSLIKMYSEYGQMNLAHQVLQQMAQQDVVSFNILIYGYA 197
            KQIH H I++G  S G YL NSL+K Y E G +  A +V   M Q DV SFN++I GYA
Sbjct: 148 VKQIHCHIIVSGCLSLGNYLWNSLVKFYMELGSLGFAEKVFAIMPQPDVSSFNVMIVGYA 207

Query: 196 RKGCSVEALQLFHEMVFKGIDPDEFTMVGLLMSCGRLSDKRLGKSIHAWITRRELYGARN 17
           ++G  +EAL+L+++MV  GI+PDE+T++GLL+ CG LSD RLGK +H WI RR    + N
Sbjct: 208 KQGFGLEALELYYKMVSDGIEPDEYTLLGLLVCCGHLSDIRLGKGVHGWIERRGPVYSSN 267

Query: 16  LILLN 2
           LIL N
Sbjct: 268 LILRN 272



 Score = 63.2 bits (152), Expect = 3e-08
 Identities = 33/98 (33%), Positives = 56/98 (57%), Gaps = 2/98 (2%)
 Frame = -3

Query: 313 NSLIKMYSEYGQMNLAHQVLQQMAQQDVVSFNILIYGYARKGCSVEAL-QLFHEM-VFKG 140
           N+++  +   G M  A  V  QM Q+D+VS+N L++ Y++KGC   A+ +LF+EM + + 
Sbjct: 303 NTMVVGFVRLGDMEAAQAVFDQMPQRDLVSWNSLLFCYSKKGCDQRAVRELFYEMLIVEK 362

Query: 139 IDPDEFTMVGLLMSCGRLSDKRLGKSIHAWITRRELYG 26
           + PD  TMV L+       +   G+ +H  + R +L G
Sbjct: 363 VKPDRVTMVSLISGAANNGELSHGRWVHGLMIRLQLEG 400


>ref|NP_187126.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|75207287|sp|Q9SR01.1|PP212_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At3g04750, mitochondrial; Flags: Precursor
           gi|6175175|gb|AAF04901.1|AC011437_16 hypothetical
           protein [Arabidopsis thaliana]
           gi|332640610|gb|AEE74131.1| pentatricopeptide
           repeat-containing protein [Arabidopsis thaliana]
          Length = 661

 Score =  164 bits (416), Expect = 7e-39
 Identities = 87/185 (47%), Positives = 118/185 (63%), Gaps = 1/185 (0%)
 Frame = -3

Query: 553 LLFNYHTLTPNLFIYNMMISALSFSTTQSFTIYQSMLQLHIYPDKHXXXXXXXXXXXXSQ 374
           LLF   T  PN+F+YN MISA+S S  + F +Y SM++  + PD+             S+
Sbjct: 89  LLFLNFTPNPNVFVYNTMISAVSSSKNECFGLYSSMIRHRVSPDRQTFLYLMKASSFLSE 148

Query: 373 GKQIHNHAIITGFKSYG-YLQNSLIKMYSEYGQMNLAHQVLQQMAQQDVVSFNILIYGYA 197
            KQIH H I++G  S G YL NSL+K Y E G   +A +V  +M   DV SFN++I GYA
Sbjct: 149 VKQIHCHIIVSGCLSLGNYLWNSLVKFYMELGNFGVAEKVFARMPHPDVSSFNVMIVGYA 208

Query: 196 RKGCSVEALQLFHEMVFKGIDPDEFTMVGLLMSCGRLSDKRLGKSIHAWITRRELYGARN 17
           ++G S+EAL+L+ +MV  GI+PDE+T++ LL+ CG LSD RLGK +H WI RR    + N
Sbjct: 209 KQGFSLEALKLYFKMVSDGIEPDEYTVLSLLVCCGHLSDIRLGKGVHGWIERRGPVYSSN 268

Query: 16  LILLN 2
           LIL N
Sbjct: 269 LILSN 273



 Score = 64.3 bits (155), Expect = 1e-08
 Identities = 32/98 (32%), Positives = 56/98 (57%), Gaps = 2/98 (2%)
 Frame = -3

Query: 313 NSLIKMYSEYGQMNLAHQVLQQMAQQDVVSFNILIYGYARKGCSVEAL-QLFHEM-VFKG 140
           N+++  +   G M  A  V  QM ++D+VS+N L++GY++KGC    + +LF+EM + + 
Sbjct: 304 NTMVVGFVRLGDMEAAQAVFDQMPKRDLVSWNSLLFGYSKKGCDQRTVRELFYEMTIVEK 363

Query: 139 IDPDEFTMVGLLMSCGRLSDKRLGKSIHAWITRRELYG 26
           + PD  TMV L+       +   G+ +H  + R +L G
Sbjct: 364 VKPDRVTMVSLISGAANNGELSHGRWVHGLVIRLQLKG 401