BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00035820
         (325 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI20844.3| unnamed protein product [Vitis vinifera]               69   5e-10
ref|XP_003535453.1| PREDICTED: pentatricopeptide repeat-containi...    61   1e-07
ref|XP_003590744.1| Pentatricopeptide repeat-containing protein ...    60   2e-07
gb|AEX12054.1| hypothetical protein 0_18789_01 [Pinus taeda]           59   4e-07
ref|XP_003545972.1| PREDICTED: pentatricopeptide repeat-containi...    59   4e-07

>emb|CBI20844.3| unnamed protein product [Vitis vinifera]
          Length = 700

 Score = 68.6 bits (166), Expect = 5e-10
 Identities = 30/36 (83%), Positives = 34/36 (94%)
 Frame = -2

Query: 324 LSNIYASKQLWHEVARIRDLMRDMGVEKEPGSSWVE 217
           LSNIYASK+LW EV+RIRDLM+DMGVEKEPG SW+E
Sbjct: 658 LSNIYASKELWSEVSRIRDLMKDMGVEKEPGCSWIE 693


>ref|XP_003535453.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Glycine max]
          Length = 782

 Score = 60.8 bits (146), Expect = 1e-07
 Identities = 27/48 (56%), Positives = 36/48 (75%)
 Frame = -2

Query: 324 LSNIYASKQLWHEVARIRDLMRDMGVEKEPGSSWVEISDMGYAFGVKD 181
           LSN+YA+   W EVAR+R LMR+ GV+KEPG SW+E+ +M + F V D
Sbjct: 619 LSNMYAALGQWDEVARVRKLMRERGVKKEPGCSWIEVENMVHVFLVDD 666


>ref|XP_003590744.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355479792|gb|AES60995.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 795

 Score = 60.1 bits (144), Expect = 2e-07
 Identities = 28/48 (58%), Positives = 36/48 (75%)
 Frame = -2

Query: 324 LSNIYASKQLWHEVARIRDLMRDMGVEKEPGSSWVEISDMGYAFGVKD 181
           LSN+YA+   W EVAR+R LMR+ GV+KEPG SWVE+ +M + F V D
Sbjct: 632 LSNMYAALGQWDEVARVRLLMRERGVKKEPGCSWVEVENMVHVFLVDD 679


>gb|AEX12054.1| hypothetical protein 0_18789_01 [Pinus taeda]
          Length = 161

 Score = 58.9 bits (141), Expect = 4e-07
 Identities = 25/48 (52%), Positives = 35/48 (72%)
 Frame = -2

Query: 324 LSNIYASKQLWHEVARIRDLMRDMGVEKEPGSSWVEISDMGYAFGVKD 181
           LSNIYA+   W +V R+R +M+D G++K PGSSW+E++   YAF V D
Sbjct: 39  LSNIYAACSRWDDVKRVRKIMKDQGIQKMPGSSWIEVNGKVYAFLVGD 86


>ref|XP_003545972.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Glycine max]
          Length = 858

 Score = 58.9 bits (141), Expect = 4e-07
 Identities = 28/52 (53%), Positives = 35/52 (67%)
 Frame = -2

Query: 324 LSNIYASKQLWHEVARIRDLMRDMGVEKEPGSSWVEISDMGYAFGVKD*SLS 169
           L+NIYAS  +W  VA++R  M+D  V+KEPG SW+EI D  Y F V D S S
Sbjct: 695 LANIYASAGMWENVAKVRKFMKDSKVKKEPGMSWIEIKDKVYTFIVGDRSHS 746