BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00035819
         (276 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002316000.1| predicted protein [Populus trichocarpa] gi|2...    74   5e-12
ref|XP_002514579.1| pentatricopeptide repeat-containing protein,...    73   3e-11
ref|XP_002892763.1| predicted protein [Arabidopsis lyrata subsp....    65   4e-09
gb|AAF99828.1|AC027134_10 Hypothetical protein [Arabidopsis thal...    64   1e-08
gb|AAF81289.1|AC027656_6 Contains similarity to a hypothetical p...    64   1e-08

>ref|XP_002316000.1| predicted protein [Populus trichocarpa] gi|222865040|gb|EEF02171.1|
           predicted protein [Populus trichocarpa]
          Length = 745

 Score = 74.3 bits (181), Expect(2) = 5e-12
 Identities = 35/61 (57%), Positives = 46/61 (75%)
 Frame = -1

Query: 276 VMLFNQMRDIGFEISIRDYSAVINRLCKRCCIDEVKILLSQMLVDGISPDQKLHEVINQH 97
           V +F+QM + GFE+SI+DYSAVINRLCKRC I+E K     ML DG+SPDQ++ E++   
Sbjct: 661 VKVFHQMVEKGFEVSIKDYSAVINRLCKRCLINEAKYYFCIMLSDGVSPDQEIFEMMLNA 720

Query: 96  F 94
           F
Sbjct: 721 F 721



 Score = 21.2 bits (43), Expect(2) = 5e-12
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -2

Query: 101 NTFYHGRDLISVLELLG*MIKTDML 27
           N F+    + SV ELL  MIK  +L
Sbjct: 719 NAFHRAGHVHSVFELLAVMIKFGLL 743


>ref|XP_002514579.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223546183|gb|EEF47685.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 840

 Score = 72.8 bits (177), Expect = 3e-11
 Identities = 35/61 (57%), Positives = 41/61 (67%)
 Frame = -1

Query: 276 VMLFNQMRDIGFEISIRDYSAVINRLCKRCCIDEVKILLSQMLVDGISPDQKLHEVINQH 97
           V+ F QM + GFE+SIRDYSAVI RLCKRC + E K     ML DG+ PDQ L EV+   
Sbjct: 756 VVYFRQMVEKGFEVSIRDYSAVIGRLCKRCLVTEAKYFFCMMLSDGVCPDQDLFEVLLNA 815

Query: 96  F 94
           F
Sbjct: 816 F 816


>ref|XP_002892763.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
           gi|297338605|gb|EFH69022.1| predicted protein
           [Arabidopsis lyrata subsp. lyrata]
          Length = 804

 Score = 65.5 bits (158), Expect = 4e-09
 Identities = 36/67 (53%), Positives = 43/67 (64%), Gaps = 2/67 (2%)
 Frame = -1

Query: 276 VMLFNQMRDIGFEISIRDYSAVINRLCKRCCIDEVKILLSQMLVDGISPDQKLHEVI--N 103
           V+LFNQ+ D GF +SIRDYSAVINRLC+R    E K     ML  GISPD  + EV+  +
Sbjct: 729 VILFNQLLDRGFNVSIRDYSAVINRLCRRHLAIESKYFFCLMLSRGISPDLDICEVMIKS 788

Query: 102 QHFLPWT 82
              L WT
Sbjct: 789 DELLSWT 795


>gb|AAF99828.1|AC027134_10 Hypothetical protein [Arabidopsis thaliana]
          Length = 337

 Score = 64.3 bits (155), Expect = 1e-08
 Identities = 34/67 (50%), Positives = 43/67 (64%), Gaps = 2/67 (2%)
 Frame = -1

Query: 276 VMLFNQMRDIGFEISIRDYSAVINRLCKRCCIDEVKILLSQMLVDGISPDQKLHEVI--N 103
           V LF+Q+   GF +SIRDYSAVINRLC+R  ++E K     ML  GISPD  + EV+  +
Sbjct: 263 VKLFHQLLHRGFNVSIRDYSAVINRLCRRHLVNESKFFFCLMLSQGISPDLDICEVMIKS 322

Query: 102 QHFLPWT 82
              L WT
Sbjct: 323 DELLSWT 329


>gb|AAF81289.1|AC027656_6 Contains similarity to a hypothetical protein F23N19.4 gi|6630464
           from Arabidopsis thaliana BAC F23N19 gb|AC007190. It
           contains a PPR repeat domain PF|01535 [Arabidopsis
           thaliana]
          Length = 797

 Score = 64.3 bits (155), Expect = 1e-08
 Identities = 34/67 (50%), Positives = 43/67 (64%), Gaps = 2/67 (2%)
 Frame = -1

Query: 276 VMLFNQMRDIGFEISIRDYSAVINRLCKRCCIDEVKILLSQMLVDGISPDQKLHEVI--N 103
           V LF+Q+   GF +SIRDYSAVINRLC+R  ++E K     ML  GISPD  + EV+  +
Sbjct: 723 VKLFHQLLHRGFNVSIRDYSAVINRLCRRHLVNESKFFFCLMLSQGISPDLDICEVMIKS 782

Query: 102 QHFLPWT 82
              L WT
Sbjct: 783 DELLSWT 789