BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00035784
         (414 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003525465.1| PREDICTED: pentatricopeptide repeat-containi...   209   1e-52
ref|XP_003550784.1| PREDICTED: LOW QUALITY PROTEIN: pentatricope...   207   9e-52
ref|XP_002514751.1| pentatricopeptide repeat-containing protein,...   196   1e-48
ref|XP_002282049.1| PREDICTED: pentatricopeptide repeat-containi...   195   4e-48
ref|XP_004155062.1| PREDICTED: pentatricopeptide repeat-containi...   191   4e-47

>ref|XP_003525465.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g47530-like [Glycine max]
          Length = 579

 Score =  209 bits (533), Expect = 1e-52
 Identities = 100/137 (72%), Positives = 115/137 (83%)
 Frame = -2

Query: 413 LSLFDFMQSYGYGCKPDDVTCLLVLQACAHLGELEFGERIRCYVDEHGYGGEFKLQNSLI 234
           LSLFD MQ   Y C+PDDVTCLL+LQACAHL  LEFGERI  Y+ E GY     L NSLI
Sbjct: 190 LSLFDVMQGSSYKCEPDDVTCLLLLQACAHLNALEFGERIHGYIMERGYRDALNLCNSLI 249

Query: 233 AMYSRCGCVDKAFEVFQGMFERNVVTWSAMISGLAMNGHGRDAIEAFREMRRMGVFPDDQ 54
           +MYSRCGC+DKA+EVF+GM  +NVV+WSAMISGLAMNG+GR+AIEAF EM R+GV PDDQ
Sbjct: 250 SMYSRCGCLDKAYEVFKGMGNKNVVSWSAMISGLAMNGYGREAIEAFEEMLRIGVLPDDQ 309

Query: 53  TFTGVLSACSHSGLVDQ 3
           TFTGVLSACS+SG+VD+
Sbjct: 310 TFTGVLSACSYSGMVDE 326



 Score = 55.8 bits (133), Expect = 3e-06
 Identities = 35/121 (28%), Positives = 57/121 (47%), Gaps = 2/121 (1%)
 Frame = -2

Query: 377 GCKPDDVTCLLVLQACAHLGELEFGERIRCYVDEHGYGGEFKLQNSLIAMYSRCGCVDKA 198
           G   D ++    +++C     L  G ++ C + + G+  +  L  +++ +YS C     A
Sbjct: 99  GIAADPLSSSFAVKSCIRFLYLPGGVQVHCNIFKDGHQWDTLLLTAVMDLYSLCQRGGDA 158

Query: 197 FEVFQGMFERNVVTWSAMISGLAMNGHGRDAIEAFREMRRMG--VFPDDQTFTGVLSACS 24
            +VF  M  R+ V W+ MIS    N   RDA+  F  M+       PDD T   +L AC+
Sbjct: 159 CKVFDEMPHRDTVAWNVMISCCIRNNRTRDALSLFDVMQGSSYKCEPDDVTCLLLLQACA 218

Query: 23  H 21
           H
Sbjct: 219 H 219


>ref|XP_003550784.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g47530-like [Glycine max]
          Length = 515

 Score =  207 bits (526), Expect = 9e-52
 Identities = 97/137 (70%), Positives = 116/137 (84%)
 Frame = -2

Query: 413 LSLFDFMQSYGYGCKPDDVTCLLVLQACAHLGELEFGERIRCYVDEHGYGGEFKLQNSLI 234
           LSLFD +Q+  Y C+PDDVTCLL+LQACAHL  LEFGERI  Y+ EHGYGG   L N+LI
Sbjct: 125 LSLFDVLQNSSYKCEPDDVTCLLLLQACAHLYALEFGERIHGYMMEHGYGGALNLSNALI 184

Query: 233 AMYSRCGCVDKAFEVFQGMFERNVVTWSAMISGLAMNGHGRDAIEAFREMRRMGVFPDDQ 54
           +MYSRCGC+DKA EVF+G   +NVV+WSAMISGLAMNG+GR+AIE+F EM R+G+ PDDQ
Sbjct: 185 SMYSRCGCLDKAXEVFKGTGNKNVVSWSAMISGLAMNGYGREAIESFEEMLRIGIRPDDQ 244

Query: 53  TFTGVLSACSHSGLVDQ 3
           T TGVLSACS+SG+VD+
Sbjct: 245 TLTGVLSACSYSGMVDE 261



 Score = 56.6 bits (135), Expect = 2e-06
 Identities = 36/123 (29%), Positives = 60/123 (48%), Gaps = 4/123 (3%)
 Frame = -2

Query: 377 GCKPDDVTCLLVLQACAHLGELEF--GERIRCYVDEHGYGGEFKLQNSLIAMYSRCGCVD 204
           G   D ++   V+++C  L  L    G ++ C + ++G+  +  L  +++ +YS C    
Sbjct: 32  GIAADPLSSSFVVKSCIRLXGLYLLGGVQVHCNIFKYGHQWDTLLLTAVMDLYSXCQRGG 91

Query: 203 KAFEVFQGMFERNVVTWSAMISGLAMNGHGRDAIEAFREMRRMG--VFPDDQTFTGVLSA 30
            A +VF  M  R+ V W+ MIS    N   RDA+  F  ++       PDD T   +L A
Sbjct: 92  DACKVFDEMPPRDTVAWNVMISCCIRNNRTRDALSLFDVLQNSSYKCEPDDVTCLLLLQA 151

Query: 29  CSH 21
           C+H
Sbjct: 152 CAH 154


>ref|XP_002514751.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223546355|gb|EEF47857.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 335

 Score =  196 bits (499), Expect = 1e-48
 Identities = 92/137 (67%), Positives = 111/137 (81%)
 Frame = -2

Query: 413 LSLFDFMQSYGYGCKPDDVTCLLVLQACAHLGELEFGERIRCYVDEHGYGGEFKLQNSLI 234
           L LFD M S  +GC+PDDVTCLL++QAC++LG LEFGE++  Y+  H YG +  L NSLI
Sbjct: 116 LGLFDDMVSGEFGCEPDDVTCLLLVQACSNLGALEFGEKVHLYIQGHRYGDKTNLCNSLI 175

Query: 233 AMYSRCGCVDKAFEVFQGMFERNVVTWSAMISGLAMNGHGRDAIEAFREMRRMGVFPDDQ 54
            MYSRCGC+DKA+ VF+ M  +NVVTWSAMISG AMNG+GR AIE F +M+R+GV PDDQ
Sbjct: 176 TMYSRCGCLDKAYGVFKNMPNKNVVTWSAMISGFAMNGYGRQAIETFGKMQRIGVLPDDQ 235

Query: 53  TFTGVLSACSHSGLVDQ 3
           TFTGVLSACSH GLVD+
Sbjct: 236 TFTGVLSACSHCGLVDE 252


>ref|XP_002282049.1| PREDICTED: pentatricopeptide repeat-containing protein At3g47530
           [Vitis vinifera]
          Length = 643

 Score =  195 bits (495), Expect = 4e-48
 Identities = 92/136 (67%), Positives = 112/136 (82%)
 Frame = -2

Query: 413 LSLFDFMQSYGYGCKPDDVTCLLVLQACAHLGELEFGERIRCYVDEHGYGGEFKLQNSLI 234
           L +FD MQS   G +PDDVTCLL+LQACA+LG LEFGER+  Y++EHGY G   L NSLI
Sbjct: 254 LRMFDIMQSTADGFEPDDVTCLLLLQACANLGALEFGERVHNYIEEHGYDGALNLCNSLI 313

Query: 233 AMYSRCGCVDKAFEVFQGMFERNVVTWSAMISGLAMNGHGRDAIEAFREMRRMGVFPDDQ 54
            MYSRCG ++KA+ +F+ M ERNVV+WSAMISG AM+G+GR+AIEAF +M+++GV PDDQ
Sbjct: 314 TMYSRCGRLEKAYSIFKRMDERNVVSWSAMISGFAMHGYGREAIEAFEQMQQLGVSPDDQ 373

Query: 53  TFTGVLSACSHSGLVD 6
           T TGVLSACSH GLVD
Sbjct: 374 TLTGVLSACSHCGLVD 389



 Score = 57.8 bits (138), Expect = 9e-07
 Identities = 35/126 (27%), Positives = 65/126 (51%), Gaps = 2/126 (1%)
 Frame = -2

Query: 377 GCKPDDVTCLLVLQACAHLGELEFGERIRCYVDEHGYGGEFKLQNSLIAMYSRCGCVDKA 198
           G  P+ ++   V+++C  +  L  G +I   +   G+  +  L  +L+ +YS C   ++A
Sbjct: 163 GVPPNPLSSSFVMKSCIRISSLMGGLQIHARILRDGHQSDNLLLTTLMDLYSCCDKFEEA 222

Query: 197 FEVFQGMFERNVVTWSAMISGLAMNGHGRDAIEAFREMRRM--GVFPDDQTFTGVLSACS 24
            +VF  + + + V+W+ +IS    N   RDA+  F  M+    G  PDD T   +L AC+
Sbjct: 223 CKVFDEIPQWDTVSWNVLISCCIHNRRTRDALRMFDIMQSTADGFEPDDVTCLLLLQACA 282

Query: 23  HSGLVD 6
           + G ++
Sbjct: 283 NLGALE 288


>ref|XP_004155062.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g47530-like [Cucumis sativus]
          Length = 602

 Score =  191 bits (486), Expect = 4e-47
 Identities = 94/137 (68%), Positives = 109/137 (79%)
 Frame = -2

Query: 413 LSLFDFMQSYGYGCKPDDVTCLLVLQACAHLGELEFGERIRCYVDEHGYGGEFKLQNSLI 234
           L LF+ MQS  Y C+PD VTCLL+LQACA L  LEFGERI  Y+ +HGY  E  L NSLI
Sbjct: 213 LGLFEIMQSPTYLCQPDKVTCLLLLQACADLNALEFGERIHGYIQQHGYNTESNLCNSLI 272

Query: 233 AMYSRCGCVDKAFEVFQGMFERNVVTWSAMISGLAMNGHGRDAIEAFREMRRMGVFPDDQ 54
           +MYSRCG +DKA+EVF  M E+NVV+WSAMISGL+MNGHGR+AIEAF EM++ GV P D 
Sbjct: 273 SMYSRCGRMDKAYEVFDKMTEKNVVSWSAMISGLSMNGHGREAIEAFWEMQKNGVEPGDH 332

Query: 53  TFTGVLSACSHSGLVDQ 3
           TFT VLSACSH GLVD+
Sbjct: 333 TFTAVLSACSHCGLVDE 349



 Score = 58.9 bits (141), Expect = 4e-07
 Identities = 35/120 (29%), Positives = 63/120 (52%), Gaps = 2/120 (1%)
 Frame = -2

Query: 377 GCKPDDVTCLLVLQACAHLGELEFGERIRCYVDEHGYGGEFKLQNSLIAMYSRCGCVDKA 198
           G + D ++    +++C  L  L FG +I   +  +G+  +  L  S++ +YS CG  ++A
Sbjct: 122 GVRADPLSSSFAVKSCIKLLSLLFGIQIHARIFINGHQADSLLLTSMMDLYSHCGKPEEA 181

Query: 197 FEVFQGMFERNVVTWSAMISGLAMNGHGRDAIEAFREMRRMGVF--PDDQTFTGVLSACS 24
            ++F  + +++VV W+ +IS L  N   RDA+  F  M+       PD  T   +L AC+
Sbjct: 182 CKLFDEVPQKDVVAWNVLISCLTRNKRTRDALGLFEIMQSPTYLCQPDKVTCLLLLQACA 241