BLASTX nr result
ID: Coptis21_contig00035734
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis21_contig00035734
(366 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002282803.1| PREDICTED: pentatricopeptide repeat-containi... 117 1e-24
emb|CAN74403.1| hypothetical protein VITISV_043633 [Vitis vinifera] 117 1e-24
ref|XP_002513505.1| pentatricopeptide repeat-containing protein,... 110 2e-22
ref|XP_004161700.1| PREDICTED: pentatricopeptide repeat-containi... 103 2e-20
ref|XP_004142223.1| PREDICTED: pentatricopeptide repeat-containi... 103 2e-20
>ref|XP_002282803.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g40720-like [Vitis vinifera]
Length = 854
Score = 117 bits (293), Expect = 1e-24
Identities = 60/115 (52%), Positives = 76/115 (66%)
Frame = +1
Query: 4 RDVAIWNAMMSAYKECGSHSKVVALFGRMQSSRDREDLTTVCIVFSAISESTSGLGIGRG 183
RD +WN+M+SAY G H + + LF RMQS ++D TV I+ S E SGL G+
Sbjct: 319 RDAPLWNSMISAYAAFGCHEEAMDLFIRMQSEGVKKDERTVVIMLSMCEELASGLLKGKS 378
Query: 184 LHALVIKRGMDIKVTLGNALLSMYANLNCVESAKIIFNEINSTDVISWNTLILVI 348
LHA VIK GM I +LGNALLSMY LNCVES + IF+ + D+ISWNT+IL +
Sbjct: 379 LHAHVIKSGMRIDASLGNALLSMYTELNCVESVQKIFDRMKGVDIISWNTMILAL 433
Score = 70.1 bits (170), Expect = 2e-10
Identities = 40/118 (33%), Positives = 67/118 (56%), Gaps = 2/118 (1%)
Frame = +1
Query: 4 RDVAIWNAMMSAYKECGSHSKVVALFGRMQSSRDREDLTTVCIVFSAISESTSGLGIGRG 183
RD+ WNAM+++Y + K + LF RM S + +T + ++ S +T L G+
Sbjct: 522 RDLISWNAMIASYVKNNQAHKALLLFHRMISEAEPNSVTIINVLSSFTHLAT--LPQGQS 579
Query: 184 LHALVIKRG--MDIKVTLGNALLSMYANLNCVESAKIIFNEINSTDVISWNTLILVIG 351
LHA V +RG + + ++L NA ++MYA ++SA+ IF + ++ISWN +I G
Sbjct: 580 LHAYVTRRGFSLGLDLSLANAFITMYARCGSLQSAENIFKTLPKRNIISWNAMIAGYG 637
Score = 66.6 bits (161), Expect = 2e-09
Identities = 37/112 (33%), Positives = 62/112 (55%)
Frame = +1
Query: 4 RDVAIWNAMMSAYKECGSHSKVVALFGRMQSSRDREDLTTVCIVFSAISESTSGLGIGRG 183
R++ WNAM+S Y + G + K + LF +M + D T+ + A +E S L +G+
Sbjct: 218 RNIVSWNAMISGYYDVGDYFKALELFVQMLVDEVKFDCVTMLVAVQACAELGS-LKLGKQ 276
Query: 184 LHALVIKRGMDIKVTLGNALLSMYANLNCVESAKIIFNEINSTDVISWNTLI 339
+H L IK + + NALL+MY+N +ES+ +F + + D WN++I
Sbjct: 277 IHQLAIKFEFVEDLYILNALLNMYSNNGSLESSHQLFESVPNRDAPLWNSMI 328
Score = 60.1 bits (144), Expect = 2e-07
Identities = 34/111 (30%), Positives = 54/111 (48%)
Frame = +1
Query: 7 DVAIWNAMMSAYKECGSHSKVVALFGRMQSSRDREDLTTVCIVFSAISESTSGLGIGRGL 186
D+ WN M+ A ++ LF RM+ S + + T+ + +A + T L GR +
Sbjct: 422 DIISWNTMILALARNTLRAQACELFERMRESEIKPNSYTIISILAACEDVTC-LDFGRSI 480
Query: 187 HALVIKRGMDIKVTLGNALLSMYANLNCVESAKIIFNEINSTDVISWNTLI 339
H V+K ++I L AL MY N +A+ +F D+ISWN +I
Sbjct: 481 HGYVMKHSIEINQPLRTALADMYMNCGDEATARDLFEGCPDRDLISWNAMI 531
>emb|CAN74403.1| hypothetical protein VITISV_043633 [Vitis vinifera]
Length = 841
Score = 117 bits (293), Expect = 1e-24
Identities = 60/115 (52%), Positives = 76/115 (66%)
Frame = +1
Query: 4 RDVAIWNAMMSAYKECGSHSKVVALFGRMQSSRDREDLTTVCIVFSAISESTSGLGIGRG 183
RD +WN+M+SAY G H + + LF RMQS ++D TV I+ S E SGL G+
Sbjct: 326 RDAPLWNSMISAYAAFGCHEEAMDLFIRMQSEGVKKDERTVVIMLSMCEELASGLLKGKS 385
Query: 184 LHALVIKRGMDIKVTLGNALLSMYANLNCVESAKIIFNEINSTDVISWNTLILVI 348
LHA VIK GM I +LGNALLSMY LNCVES + IF+ + D+ISWNT+IL +
Sbjct: 386 LHAHVIKSGMRIDASLGNALLSMYTELNCVESVQKIFDRMKGVDIISWNTMILAL 440
Score = 66.6 bits (161), Expect = 2e-09
Identities = 37/112 (33%), Positives = 62/112 (55%)
Frame = +1
Query: 4 RDVAIWNAMMSAYKECGSHSKVVALFGRMQSSRDREDLTTVCIVFSAISESTSGLGIGRG 183
R++ WNAM+S Y + G + K + LF +M + D T+ + A +E S L +G+
Sbjct: 225 RNIVSWNAMISGYYDVGDYFKALELFVQMLVDEVKFDCVTMLVAVQACAELGS-LKLGKQ 283
Query: 184 LHALVIKRGMDIKVTLGNALLSMYANLNCVESAKIIFNEINSTDVISWNTLI 339
+H L IK + + NALL+MY+N +ES+ +F + + D WN++I
Sbjct: 284 IHQLAIKFEFVEDLYILNALLNMYSNNGSLESSHQLFESVPNRDAPLWNSMI 335
Score = 60.1 bits (144), Expect = 2e-07
Identities = 34/111 (30%), Positives = 54/111 (48%)
Frame = +1
Query: 7 DVAIWNAMMSAYKECGSHSKVVALFGRMQSSRDREDLTTVCIVFSAISESTSGLGIGRGL 186
D+ WN M+ A ++ LF RM+ S + + T+ + +A + T L GR +
Sbjct: 429 DIISWNTMILALARNTLRAQACELFERMRESEIKPNSYTIISILAACEDVTC-LDFGRSI 487
Query: 187 HALVIKRGMDIKVTLGNALLSMYANLNCVESAKIIFNEINSTDVISWNTLI 339
H V+K ++I L AL MY N +A+ +F D+ISWN +I
Sbjct: 488 HGYVMKHSIEINQPLRTALADMYMNCGDEATARDLFEGCPDRDLISWNAMI 538
>ref|XP_002513505.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223547413|gb|EEF48908.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 474
Score = 110 bits (274), Expect = 2e-22
Identities = 55/121 (45%), Positives = 82/121 (67%)
Frame = +1
Query: 1 TRDVAIWNAMMSAYKECGSHSKVVALFGRMQSSRDREDLTTVCIVFSAISESTSGLGIGR 180
TRDVA+WN+M+SAY + + + +LF M++ + RED T+ ++ S +E+ GL +G+
Sbjct: 111 TRDVALWNSMISAYIDYAYYEEANSLFSTMRT-KTREDERTIAVMLSLCAEAADGLKMGK 169
Query: 181 GLHALVIKRGMDIKVTLGNALLSMYANLNCVESAKIIFNEINSTDVISWNTLILVIGNCK 360
LHAL K GM + + NALL MYA+LNC ESA +FNE++ DV+S+NTLIL + +
Sbjct: 170 SLHALACKNGMRMDNSTANALLRMYADLNCAESALKVFNEMSDVDVVSYNTLILALCSSN 229
Query: 361 L 363
L
Sbjct: 230 L 230
Score = 68.2 bits (165), Expect = 7e-10
Identities = 35/118 (29%), Positives = 66/118 (55%), Gaps = 2/118 (1%)
Frame = +1
Query: 4 RDVAIWNAMMSAYKECGSHSKVVALFGRMQSSRDREDLTTVCIVFSAISESTSGLGIGRG 183
RD+ +WNAM++A+ + + + + F RM S + +T + ++ + + L G+
Sbjct: 314 RDLILWNAMIAAFLKKNKNGEALLFFNRMISEEEPNSVTIINVLSTC--SDLANLPYGQC 371
Query: 184 LHALVIKR--GMDIKVTLGNALLSMYANLNCVESAKIIFNEINSTDVISWNTLILVIG 351
LHA +R + + ++L NA ++MYA +++A+ IF + D+ISWNT+I G
Sbjct: 372 LHAYAARRYSPISLNLSLANAFITMYARCGSMQNAEKIFKTLPKRDIISWNTMITGYG 429
Score = 54.7 bits (130), Expect = 8e-06
Identities = 30/111 (27%), Positives = 54/111 (48%)
Frame = +1
Query: 7 DVAIWNAMMSAYKECGSHSKVVALFGRMQSSRDREDLTTVCIVFSAISESTSGLGIGRGL 186
DV +N ++ A + LFG M+ S+ + T+ + + + T L IGR +
Sbjct: 214 DVVSYNTLILALCSSNLRGEAWELFGMMRESKVNPNSHTMISLLAVCGDETC-LNIGRSI 272
Query: 187 HALVIKRGMDIKVTLGNALLSMYANLNCVESAKIIFNEINSTDVISWNTLI 339
H V+K+G++ ++ +L MY + +AK +F D+I WN +I
Sbjct: 273 HGFVVKQGIETNLSWNTSLADMYISCGDETTAKYLFEICPDRDLILWNAMI 323
>ref|XP_004161700.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g02330-like [Cucumis sativus]
Length = 847
Score = 103 bits (256), Expect = 2e-20
Identities = 49/113 (43%), Positives = 75/113 (66%)
Frame = +1
Query: 1 TRDVAIWNAMMSAYKECGSHSKVVALFGRMQSSRDREDLTTVCIVFSAISESTSGLGIGR 180
T D A+WN+M+S+Y G H++ +ALF +M+ R +ED+ T+ I+ S ++ G GR
Sbjct: 325 TSDAALWNSMISSYIGFGFHAEAIALFIKMRLERIKEDVRTIAIMLSLCNDLNDGSIWGR 384
Query: 181 GLHALVIKRGMDIKVTLGNALLSMYANLNCVESAKIIFNEINSTDVISWNTLI 339
GLHA +K G+++ LGNALLSMY N + +A+ +F ++ DVISWNT+I
Sbjct: 385 GLHAHAMKSGIELDAYLGNALLSMYVKHNQITAAQYVFEKMRGLDVISWNTMI 437
Score = 63.5 bits (153), Expect = 2e-08
Identities = 36/111 (32%), Positives = 55/111 (49%)
Frame = +1
Query: 7 DVAIWNAMMSAYKECGSHSKVVALFGRMQSSRDREDLTTVCIVFSAISESTSGLGIGRGL 186
DV WN M+SA+ + +K LF M S + + T+ + A + S L GR +
Sbjct: 429 DVISWNTMISAFAQSMFRAKAFELFLMMCESEIKFNSYTI-VSLLAFCKDGSDLVFGRSI 487
Query: 187 HALVIKRGMDIKVTLGNALLSMYANLNCVESAKIIFNEINSTDVISWNTLI 339
H IK G++I +L +L MY N +A +F D++SWN+LI
Sbjct: 488 HGFAIKNGLEINTSLNTSLTEMYINCGDERAATNMFTRCPQRDLVSWNSLI 538
Score = 62.0 bits (149), Expect = 5e-08
Identities = 34/112 (30%), Positives = 62/112 (55%)
Frame = +1
Query: 4 RDVAIWNAMMSAYKECGSHSKVVALFGRMQSSRDREDLTTVCIVFSAISESTSGLGIGRG 183
R++ WNA+++ + G +K + L+ M + D T+ +V A +E L +G
Sbjct: 225 RNIVSWNAIITGFLNVGDCAKALKLYSSMLIEGIKFDAVTMLVVIQACAEYGC-LRLGMQ 283
Query: 184 LHALVIKRGMDIKVTLGNALLSMYANLNCVESAKIIFNEINSTDVISWNTLI 339
LH L IK + + + NALL+MY++ +ES+ +FN + ++D WN++I
Sbjct: 284 LHQLAIKFNLINDLFILNALLNMYSDNGSLESSWALFNAVPTSDAALWNSMI 335
Score = 60.8 bits (146), Expect = 1e-07
Identities = 34/118 (28%), Positives = 64/118 (54%), Gaps = 2/118 (1%)
Frame = +1
Query: 4 RDVAIWNAMMSAYKECGSHSKVVALFGRMQSSRDREDLTTVCIVFSAISESTSGLGIGRG 183
RD+ WN+++S+Y + + K + LF M S + +T + I+ S + L +G+
Sbjct: 529 RDLVSWNSLISSYIKNDNAGKALLLFNHMISELEPNSVTIINILTSCTQ--LAHLPLGQC 586
Query: 184 LHALVIKR--GMDIKVTLGNALLSMYANLNCVESAKIIFNEINSTDVISWNTLILVIG 351
LHA +R +++ +L NA ++MYA ++ A+ IF + + ++SWN +I G
Sbjct: 587 LHAYTTRREVSLEMDASLANAFITMYARCGKLQYAEKIFCTLQTRSIVSWNAMITGYG 644
Score = 56.2 bits (134), Expect = 3e-06
Identities = 35/122 (28%), Positives = 64/122 (52%), Gaps = 4/122 (3%)
Frame = +1
Query: 4 RDVAIWNAMMSAYKECGSHSKVVALFGRMQSSRDREDLTTVCIVFSAISESTSGLGIGRG 183
RD+ WNA++S Y C + + V LF M+ + + TV + A E L +G+
Sbjct: 124 RDLVSWNALISGYVGCLCYKEAVLLFVEMKKAGLTPNSRTVVALLLACGEMLE-LRLGQE 182
Query: 184 LHALVIKRGM-DIKVTLGNALLSMYANLNCVESAKIIFNEINSTDVISWNTLI---LVIG 351
+H ++ G+ D+ +G AL+ Y + V S + +F+ + +++SWN +I L +G
Sbjct: 183 IHGYCLRNGLFDMDAYVGTALVGFYMRFDAVLSHR-VFSLMLVRNIVSWNAIITGFLNVG 241
Query: 352 NC 357
+C
Sbjct: 242 DC 243
>ref|XP_004142223.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g02330-like [Cucumis sativus]
Length = 847
Score = 103 bits (256), Expect = 2e-20
Identities = 49/113 (43%), Positives = 75/113 (66%)
Frame = +1
Query: 1 TRDVAIWNAMMSAYKECGSHSKVVALFGRMQSSRDREDLTTVCIVFSAISESTSGLGIGR 180
T D A+WN+M+S+Y G H++ +ALF +M+ R +ED+ T+ I+ S ++ G GR
Sbjct: 325 TSDAALWNSMISSYIGFGFHAEAIALFIKMRLERIKEDVRTIAIMLSLCNDLNDGSIWGR 384
Query: 181 GLHALVIKRGMDIKVTLGNALLSMYANLNCVESAKIIFNEINSTDVISWNTLI 339
GLHA +K G+++ LGNALLSMY N + +A+ +F ++ DVISWNT+I
Sbjct: 385 GLHAHAMKSGIELDAYLGNALLSMYVKHNQITAAQYVFEKMRGLDVISWNTMI 437
Score = 63.5 bits (153), Expect = 2e-08
Identities = 36/111 (32%), Positives = 55/111 (49%)
Frame = +1
Query: 7 DVAIWNAMMSAYKECGSHSKVVALFGRMQSSRDREDLTTVCIVFSAISESTSGLGIGRGL 186
DV WN M+SA+ + +K LF M S + + T+ + A + S L GR +
Sbjct: 429 DVISWNTMISAFAQSMFRAKAFELFLMMCESEIKFNSYTI-VSLLAFCKDGSDLVFGRSI 487
Query: 187 HALVIKRGMDIKVTLGNALLSMYANLNCVESAKIIFNEINSTDVISWNTLI 339
H IK G++I +L +L MY N +A +F D++SWN+LI
Sbjct: 488 HGFAIKNGLEINTSLNTSLTEMYINCGDERAATNMFTRCPQRDLVSWNSLI 538
Score = 62.0 bits (149), Expect = 5e-08
Identities = 34/112 (30%), Positives = 62/112 (55%)
Frame = +1
Query: 4 RDVAIWNAMMSAYKECGSHSKVVALFGRMQSSRDREDLTTVCIVFSAISESTSGLGIGRG 183
R++ WNA+++ + G +K + L+ M + D T+ +V A +E L +G
Sbjct: 225 RNIVSWNAIITGFLNVGDCAKALKLYSSMLIEGIKFDAVTMLVVIQACAEYGC-LRLGMQ 283
Query: 184 LHALVIKRGMDIKVTLGNALLSMYANLNCVESAKIIFNEINSTDVISWNTLI 339
LH L IK + + + NALL+MY++ +ES+ +FN + ++D WN++I
Sbjct: 284 LHQLAIKFNLINDLFILNALLNMYSDNGSLESSWALFNAVPTSDAALWNSMI 335
Score = 60.8 bits (146), Expect = 1e-07
Identities = 34/118 (28%), Positives = 64/118 (54%), Gaps = 2/118 (1%)
Frame = +1
Query: 4 RDVAIWNAMMSAYKECGSHSKVVALFGRMQSSRDREDLTTVCIVFSAISESTSGLGIGRG 183
RD+ WN+++S+Y + + K + LF M S + +T + I+ S + L +G+
Sbjct: 529 RDLVSWNSLISSYIKNDNAGKALLLFNHMISELEPNSVTIINILTSCTQ--LAHLPLGQC 586
Query: 184 LHALVIKR--GMDIKVTLGNALLSMYANLNCVESAKIIFNEINSTDVISWNTLILVIG 351
LHA +R +++ +L NA ++MYA ++ A+ IF + + ++SWN +I G
Sbjct: 587 LHAYTTRREVSLEMDASLANAFITMYARCGKLQYAEKIFCTLQTRSIVSWNAMITGYG 644
Score = 56.2 bits (134), Expect = 3e-06
Identities = 35/122 (28%), Positives = 64/122 (52%), Gaps = 4/122 (3%)
Frame = +1
Query: 4 RDVAIWNAMMSAYKECGSHSKVVALFGRMQSSRDREDLTTVCIVFSAISESTSGLGIGRG 183
RD+ WNA++S Y C + + V LF M+ + + TV + A E L +G+
Sbjct: 124 RDLVSWNALISGYVGCLCYKEAVLLFVEMKKAGLTPNSRTVVALLLACGEMLE-LRLGQE 182
Query: 184 LHALVIKRGM-DIKVTLGNALLSMYANLNCVESAKIIFNEINSTDVISWNTLI---LVIG 351
+H ++ G+ D+ +G AL+ Y + V S + +F+ + +++SWN +I L +G
Sbjct: 183 IHGYCLRNGLFDMDAYVGTALVGFYMRFDAVLSHR-VFSLMLVRNIVSWNAIITGFLNVG 241
Query: 352 NC 357
+C
Sbjct: 242 DC 243