BLASTX nr result

ID: Coptis21_contig00035732 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00035732
         (215 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004172144.1| PREDICTED: condensin complex subunit 3-like ...    60   2e-07
ref|XP_004153102.1| PREDICTED: condensin complex subunit 3-like,...    60   2e-07
ref|XP_002868528.1| EMB2656 [Arabidopsis lyrata subsp. lyrata] g...    55   4e-06

>ref|XP_004172144.1| PREDICTED: condensin complex subunit 3-like [Cucumis sativus]
          Length = 271

 Score = 59.7 bits (143), Expect = 2e-07
 Identities = 28/58 (48%), Positives = 42/58 (72%), Gaps = 3/58 (5%)
 Frame = +3

Query: 3   IRFISIFAAHRDDTIS---DKFLEDFLRYLIIVSAALNKAVRFQSCQILSERLLRFLD 167
           IRFIS+F+  RD   +   D FLE+FL++L++ S A NK+ RF++CQI+SE ++R  D
Sbjct: 85  IRFISLFSTSRDPNFASHADDFLEEFLKFLLVASCAANKSARFRACQIVSEIIMRLPD 142


>ref|XP_004153102.1| PREDICTED: condensin complex subunit 3-like, partial [Cucumis
           sativus]
          Length = 251

 Score = 59.7 bits (143), Expect = 2e-07
 Identities = 28/58 (48%), Positives = 42/58 (72%), Gaps = 3/58 (5%)
 Frame = +3

Query: 3   IRFISIFAAHRDDTIS---DKFLEDFLRYLIIVSAALNKAVRFQSCQILSERLLRFLD 167
           IRFIS+F+  RD   +   D FLE+FL++L++ S A NK+ RF++CQI+SE ++R  D
Sbjct: 85  IRFISLFSTSRDPNFASHADDFLEEFLKFLLVASCAANKSARFRACQIVSEIIMRLPD 142


>ref|XP_002868528.1| EMB2656 [Arabidopsis lyrata subsp. lyrata]
           gi|297314364|gb|EFH44787.1| EMB2656 [Arabidopsis lyrata
           subsp. lyrata]
          Length = 1050

 Score = 55.5 bits (132), Expect = 4e-06
 Identities = 28/59 (47%), Positives = 41/59 (69%), Gaps = 4/59 (6%)
 Frame = +3

Query: 3   IRFISIFAAHR----DDTISDKFLEDFLRYLIIVSAALNKAVRFQSCQILSERLLRFLD 167
           +RF + FA  R    DD+  D+FLE+FLR+L++ S A N+  RF++CQI+SE +LR  D
Sbjct: 88  VRFAAEFACLRSNSDDDSDCDEFLEEFLRFLVVGSVAANRNARFRACQIISEIILRLPD 146


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