BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00035696
         (322 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAG51641.1|AC018908_7 putative U2 snRNP auxiliary factor; 190...    58   7e-07
ref|NP_176287.3| Splicing factor U2af large subunit B [Arabidops...    58   7e-07
ref|NP_564764.1| RNA recognition motif-containing protein [Arabi...    58   7e-07
ref|XP_002888120.1| hypothetical protein ARALYDRAFT_475241 [Arab...    58   7e-07
gb|AAM98156.1| putative U2 snRNP auxiliary factor [Arabidopsis t...    58   7e-07

>gb|AAG51641.1|AC018908_7 putative U2 snRNP auxiliary factor; 19096-22891 [Arabidopsis
           thaliana]
          Length = 568

 Score = 58.2 bits (139), Expect = 7e-07
 Identities = 28/62 (45%), Positives = 40/62 (64%), Gaps = 1/62 (1%)
 Frame = +1

Query: 1   YGTLKSVVIPHRN-GKEKTTAAGRVFLEYSFIKDSAKAMKGINGMQLGYKRILAFYYPGD 177
           +G L +VVIP  N   + T   G+VFLEY+ +  S+KA  G+NG + G  +++A YYP D
Sbjct: 500 FGNLVNVVIPRPNPDHDPTPGVGKVFLEYADVDGSSKARSGMNGRKFGGNQVVAVYYPED 559

Query: 178 KY 183
           KY
Sbjct: 560 KY 561


>ref|NP_176287.3| Splicing factor U2af large subunit B [Arabidopsis thaliana]
           gi|209572798|sp|Q8L716.2|U2A2B_ARATH RecName:
           Full=Splicing factor U2af large subunit B; AltName:
           Full=U2 auxiliary factor 65 kDa subunit B; AltName:
           Full=U2 small nuclear ribonucleoprotein auxiliary factor
           large subunit B; Short=U2 snRNP auxiliary factor large
           subunit B gi|332195625|gb|AEE33746.1| Splicing factor
           U2af large subunit B [Arabidopsis thaliana]
          Length = 589

 Score = 58.2 bits (139), Expect = 7e-07
 Identities = 28/62 (45%), Positives = 40/62 (64%), Gaps = 1/62 (1%)
 Frame = +1

Query: 1   YGTLKSVVIPHRN-GKEKTTAAGRVFLEYSFIKDSAKAMKGINGMQLGYKRILAFYYPGD 177
           +G L +VVIP  N   + T   G+VFLEY+ +  S+KA  G+NG + G  +++A YYP D
Sbjct: 521 FGNLVNVVIPRPNPDHDPTPGVGKVFLEYADVDGSSKARSGMNGRKFGGNQVVAVYYPED 580

Query: 178 KY 183
           KY
Sbjct: 581 KY 582


>ref|NP_564764.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
           gi|12323801|gb|AAG51869.1|AC079675_4 U2 snRNP auxiliary
           factor, large subunit, putative; 15147-15692
           [Arabidopsis thaliana] gi|332195616|gb|AEE33737.1| RNA
           recognition motif-containing protein [Arabidopsis
           thaliana]
          Length = 111

 Score = 58.2 bits (139), Expect = 7e-07
 Identities = 28/62 (45%), Positives = 40/62 (64%), Gaps = 1/62 (1%)
 Frame = +1

Query: 1   YGTLKSVVIPHRN-GKEKTTAAGRVFLEYSFIKDSAKAMKGINGMQLGYKRILAFYYPGD 177
           +G L +VVIP  N   + T   G+VFLEY+ +  S+KA  G+NG + G  +++A YYP D
Sbjct: 43  FGNLVNVVIPRPNPDHDPTPGVGKVFLEYADVDGSSKARSGMNGRKFGGNQVVAVYYPED 102

Query: 178 KY 183
           KY
Sbjct: 103 KY 104


>ref|XP_002888120.1| hypothetical protein ARALYDRAFT_475241 [Arabidopsis lyrata subsp.
           lyrata] gi|297333961|gb|EFH64379.1| hypothetical protein
           ARALYDRAFT_475241 [Arabidopsis lyrata subsp. lyrata]
          Length = 589

 Score = 58.2 bits (139), Expect = 7e-07
 Identities = 28/62 (45%), Positives = 40/62 (64%), Gaps = 1/62 (1%)
 Frame = +1

Query: 1   YGTLKSVVIPHRN-GKEKTTAAGRVFLEYSFIKDSAKAMKGINGMQLGYKRILAFYYPGD 177
           +G L +VVIP  N   + T   G+VFLEY+ +  S+KA  G+NG + G  +++A YYP D
Sbjct: 521 FGNLVNVVIPRPNPDHDPTPGVGKVFLEYADVDGSSKARSGMNGRKFGGNQVVAVYYPED 580

Query: 178 KY 183
           KY
Sbjct: 581 KY 582


>gb|AAM98156.1| putative U2 snRNP auxiliary factor [Arabidopsis thaliana]
          Length = 589

 Score = 58.2 bits (139), Expect = 7e-07
 Identities = 28/62 (45%), Positives = 40/62 (64%), Gaps = 1/62 (1%)
 Frame = +1

Query: 1   YGTLKSVVIPHRN-GKEKTTAAGRVFLEYSFIKDSAKAMKGINGMQLGYKRILAFYYPGD 177
           +G L +VVIP  N   + T   G+VFLEY+ +  S+KA  G+NG + G  +++A YYP D
Sbjct: 521 FGNLVNVVIPRPNPDHDPTPGVGKVFLEYADVDGSSKARSGMNGRKFGGNQVVAVYYPED 580

Query: 178 KY 183
           KY
Sbjct: 581 KY 582