BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00035628
         (349 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AFP55537.1| retrotransposon polyprotein [Rosa rugosa]               92   6e-17
emb|CAN78447.1| hypothetical protein VITISV_026810 [Vitis vinifera]    85   5e-15
emb|CAN77680.1| hypothetical protein VITISV_040762 [Vitis vinifera]    77   1e-12
emb|CAN66496.1| hypothetical protein VITISV_036886 [Vitis vinifera]    76   3e-12
emb|CCH50966.1| T4.5 [Malus x robusta]                                 75   4e-12

>gb|AFP55537.1| retrotransposon polyprotein [Rosa rugosa]
          Length = 1384

 Score = 91.7 bits (226), Expect = 6e-17
 Identities = 44/86 (51%), Positives = 58/86 (67%)
 Frame = -3

Query: 347 DLKTGSSLLHGQNENGLYPLHIHNQISS*SGRPFAFVGLRVGAQVWHSRLDHPVSNTLSR 168
           DLKTG  L HG++ENGLYP    ++ S  S    A+V  RV A+ WHSRL H  S  +S+
Sbjct: 443 DLKTGKMLYHGKSENGLYPFRFPSKTSKVSSS-LAYVSSRVSAETWHSRLGHASSTIVSK 501

Query: 167 LMSNKCLPLKGSTSISFCHSCSLGKS 90
           ++SNK +P+ GS++ SFC SC LGKS
Sbjct: 502 VLSNKAVPVLGSSNFSFCQSCPLGKS 527


>emb|CAN78447.1| hypothetical protein VITISV_026810 [Vitis vinifera]
          Length = 1171

 Score = 85.1 bits (209), Expect = 5e-15
 Identities = 49/114 (42%), Positives = 63/114 (55%), Gaps = 5/114 (4%)
 Frame = -3

Query: 338 TGSSLLHGQNENGLYPLH----IHNQISS*SGRPFAFVGLRVGAQVWHSRLDHPVSNTLS 171
           TG  LL G  ENGLYPL      H  ++  S      +G+R  A  WHSRL HP S   +
Sbjct: 418 TGRILLQGVVENGLYPLAGCKTFHKSLTCLS----TTIGVRANADTWHSRLGHPSSVIFN 473

Query: 170 RLMSNKCLPLKGS-TSISFCHSCSLGKSTKLPFSLSNSITKFSLELVHSDVWCS 12
            L  +  L +KGS T + FC +C LGK+ +LPF  S+  +   L L+HSDVW S
Sbjct: 474 SLFHSNKLSVKGSSTKLEFCSACQLGKAKQLPFPESSRQSSVPLALIHSDVWVS 527


>emb|CAN77680.1| hypothetical protein VITISV_040762 [Vitis vinifera]
          Length = 590

 Score = 77.4 bits (189), Expect = 1e-12
 Identities = 45/114 (39%), Positives = 62/114 (54%), Gaps = 4/114 (3%)
 Frame = -3

Query: 347 DLKTGSSLLHGQNENGLYPLHIHNQISS*SGRPFAFVGLRVGAQVWHSRLDHPVSNTLSR 168
           D +TG  LL G  ENG+YP+      SS +  P AFV  R     WH RL HP    ++R
Sbjct: 391 DRRTGEILLQGPCENGVYPMP-----SSPAATPIAFVHERTSVTGWHQRLGHPSFKVVTR 445

Query: 167 LMSNKCLP----LKGSTSISFCHSCSLGKSTKLPFSLSNSITKFSLELVHSDVW 18
           L+S+  LP    L GS +   CHSCS+ K+ +LPF      +    +L+++DVW
Sbjct: 446 LISSFSLPTTSCLSGSNN---CHSCSINKAHQLPFHKHGLTSTTPFDLLYTDVW 496


>emb|CAN66496.1| hypothetical protein VITISV_036886 [Vitis vinifera]
          Length = 1092

 Score = 76.3 bits (186), Expect = 3e-12
 Identities = 43/110 (39%), Positives = 56/110 (50%)
 Frame = -3

Query: 347 DLKTGSSLLHGQNENGLYPLHIHNQISS*SGRPFAFVGLRVGAQVWHSRLDHPVSNTLSR 168
           D  TG+ L+ G+ ENG+YP+ +  Q SS         G RV    WH RL H     LS 
Sbjct: 294 DRMTGAXLMRGRCENGVYPVAL--QSSSPQXNQIHLAGTRVTFDCWHHRLGHXTPKILSS 351

Query: 167 LMSNKCLPLKGSTSISFCHSCSLGKSTKLPFSLSNSITKFSLELVHSDVW 18
           L+ +  LP+  S S   C SC   KS KLPFS ++      LE ++ DVW
Sbjct: 352 LLQSHDLPVASSKSTLSCISCQCNKSHKLPFSSTSLKNXVXLEFLYDDVW 401


>emb|CCH50966.1| T4.5 [Malus x robusta]
          Length = 1670

 Score = 75.5 bits (184), Expect = 4e-12
 Identities = 42/113 (37%), Positives = 60/113 (53%), Gaps = 3/113 (2%)
 Frame = -3

Query: 347  DLKTGSSLLHGQNENGLYPLHIH--NQISS*SGRPFAFVGLRVGAQVWHSRLDHPVSNTL 174
            DL TG  L  G +E GLYP + +  N +S  +  P A +  +     WH RL HP   TL
Sbjct: 685  DLSTGKMLFQGPSEGGLYPFYWNASNGVSGIAISPTALMIAKADIHTWHRRLGHPSGGTL 744

Query: 173  SRLMSNKCLPLKGSTS-ISFCHSCSLGKSTKLPFSLSNSITKFSLELVHSDVW 18
              ++    LP+ G  + +S C +C LGKS +L FS     +   L+L+H+DVW
Sbjct: 745  HSVVHKNHLPVIGYVNNMSVCTACQLGKSYRLSFSTLPCTSSRPLQLLHTDVW 797