BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00035597
         (483 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI38165.3| unnamed protein product [Vitis vinifera]              251   4e-65
ref|XP_002264325.1| PREDICTED: pentatricopeptide repeat-containi...   251   4e-65
ref|XP_003602631.1| Pentatricopeptide repeat-containing protein ...   247   6e-64
ref|XP_002310520.1| predicted protein [Populus trichocarpa] gi|2...   246   1e-63
ref|XP_003540710.1| PREDICTED: pentatricopeptide repeat-containi...   243   1e-62

>emb|CBI38165.3| unnamed protein product [Vitis vinifera]
          Length = 654

 Score =  251 bits (641), Expect = 4e-65
 Identities = 118/159 (74%), Positives = 137/159 (86%)
 Frame = +3

Query: 3   YAQNGKGSEALALFSRMLRSGERPDHVTMIGVLSACSHAGMVEEGQRYFYSMTQEHGLVP 182
           YAQNG G+EAL +F +ML  GE+PDHVTMIGVL ACSHAG+VEEG+ YF+SM +EHGL+P
Sbjct: 433 YAQNGYGAEALQIFRKMLVCGEKPDHVTMIGVLCACSHAGLVEEGRHYFFSM-EEHGLIP 491

Query: 183 SKDHYTCMVDLLGRAGCVREAKKFIESMPMEADTVLWGSLLASCKVHGNLEMGTHVAEKL 362
            KDHYTCMVDLLGRAGC+ EAK  IE+MP+  D V+WGSLLA+CKVHGN+EMG H AEKL
Sbjct: 492 LKDHYTCMVDLLGRAGCLNEAKNLIEAMPVNPDAVVWGSLLAACKVHGNIEMGKHAAEKL 551

Query: 363 LEFDPSNSGPYVLLSNMYAELKQWGEVARVRTLMRRRGV 479
           LE DP NSGPYVLLSNMYAEL +WG+V RVR LMR++GV
Sbjct: 552 LEIDPWNSGPYVLLSNMYAELGRWGDVVRVRKLMRQQGV 590


>ref|XP_002264325.1| PREDICTED: pentatricopeptide repeat-containing protein At2g13600
           [Vitis vinifera]
          Length = 684

 Score =  251 bits (641), Expect = 4e-65
 Identities = 118/159 (74%), Positives = 137/159 (86%)
 Frame = +3

Query: 3   YAQNGKGSEALALFSRMLRSGERPDHVTMIGVLSACSHAGMVEEGQRYFYSMTQEHGLVP 182
           YAQNG G+EAL +F +ML  GE+PDHVTMIGVL ACSHAG+VEEG+ YF+SM +EHGL+P
Sbjct: 463 YAQNGYGAEALQIFRKMLVCGEKPDHVTMIGVLCACSHAGLVEEGRHYFFSM-EEHGLIP 521

Query: 183 SKDHYTCMVDLLGRAGCVREAKKFIESMPMEADTVLWGSLLASCKVHGNLEMGTHVAEKL 362
            KDHYTCMVDLLGRAGC+ EAK  IE+MP+  D V+WGSLLA+CKVHGN+EMG H AEKL
Sbjct: 522 LKDHYTCMVDLLGRAGCLNEAKNLIEAMPVNPDAVVWGSLLAACKVHGNIEMGKHAAEKL 581

Query: 363 LEFDPSNSGPYVLLSNMYAELKQWGEVARVRTLMRRRGV 479
           LE DP NSGPYVLLSNMYAEL +WG+V RVR LMR++GV
Sbjct: 582 LEIDPWNSGPYVLLSNMYAELGRWGDVVRVRKLMRQQGV 620


>ref|XP_003602631.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355491679|gb|AES72882.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 705

 Score =  247 bits (631), Expect = 6e-64
 Identities = 118/160 (73%), Positives = 135/160 (84%)
 Frame = +3

Query: 3   YAQNGKGSEALALFSRMLRSGERPDHVTMIGVLSACSHAGMVEEGQRYFYSMTQEHGLVP 182
           YAQNG G+EAL +F  ML SGERPDHVTMIGVLSACSHAG+VEEG+ YF SMT EHGLVP
Sbjct: 467 YAQNGYGTEALEIFREMLVSGERPDHVTMIGVLSACSHAGLVEEGRCYFQSMTIEHGLVP 526

Query: 183 SKDHYTCMVDLLGRAGCVREAKKFIESMPMEADTVLWGSLLASCKVHGNLEMGTHVAEKL 362
            KDHYTCMVDLLGRAGC+ EA   I++MPME D V+WGSLLA+CKVHGN+ +G +VAE+L
Sbjct: 527 VKDHYTCMVDLLGRAGCLDEANNLIQTMPMEPDAVVWGSLLAACKVHGNITLGKYVAERL 586

Query: 363 LEFDPSNSGPYVLLSNMYAELKQWGEVARVRTLMRRRGVV 482
           LE DP NSGPYVLLSNMYAEL +W +V RVR  MR+ GV+
Sbjct: 587 LEIDPLNSGPYVLLSNMYAELGRWKDVVRVRKQMRQMGVI 626


>ref|XP_002310520.1| predicted protein [Populus trichocarpa] gi|222853423|gb|EEE90970.1|
           predicted protein [Populus trichocarpa]
          Length = 710

 Score =  246 bits (628), Expect = 1e-63
 Identities = 113/160 (70%), Positives = 135/160 (84%)
 Frame = +3

Query: 3   YAQNGKGSEALALFSRMLRSGERPDHVTMIGVLSACSHAGMVEEGQRYFYSMTQEHGLVP 182
           YAQNG G EAL LF +ML SGE+PDHVTMIG L ACSHAG+VEEG+RYF+SMT+EHGL+P
Sbjct: 472 YAQNGYGMEALELFQKMLESGEKPDHVTMIGTLCACSHAGLVEEGRRYFFSMTKEHGLLP 531

Query: 183 SKDHYTCMVDLLGRAGCVREAKKFIESMPMEADTVLWGSLLASCKVHGNLEMGTHVAEKL 362
            KDHYTCMVDLLGRAGC+ EAK  IESMP + D V+W SLL++CKVH N+ +G +VAEK+
Sbjct: 532 VKDHYTCMVDLLGRAGCLEEAKDLIESMPKQPDAVVWSSLLSACKVHRNITLGKYVAEKI 591

Query: 363 LEFDPSNSGPYVLLSNMYAELKQWGEVARVRTLMRRRGVV 482
            E DP++SGPYVLL+NMY+EL +WG+   VR LMRRRGVV
Sbjct: 592 FEIDPTSSGPYVLLANMYSELGRWGDAVSVRKLMRRRGVV 631



 Score = 54.3 bits (129), Expect = 1e-05
 Identities = 38/129 (29%), Positives = 55/129 (42%), Gaps = 10/129 (7%)
 Frame = +3

Query: 3   YAQNGKGSEALALFSRMLRSGERPDHVTMIGVLSACSHAGMVEEGQRYFYSMTQEHGLVP 182
           Y QNG   EAL  F RM   G +PD VT+  V+SAC+     +EG        Q H  V 
Sbjct: 232 YEQNGPAIEALEAFGRMTELGFKPDEVTLASVVSACATLAAFKEG-------VQIHARVV 284

Query: 183 SKDHY-------TCMVDLLGRAGCVREAKKFIESMPME---ADTVLWGSLLASCKVHGNL 332
             D +         +VD+  + G V EA+   + MP+    ++T +      S  V    
Sbjct: 285 KSDKFRNDLILGNALVDMYAKCGRVNEARCVFDRMPVRNAVSETTMVSGYAKSASVKAAR 344

Query: 333 EMGTHVAEK 359
            M   + +K
Sbjct: 345 SMFATIKQK 353


>ref|XP_003540710.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g13600-like [Glycine max]
          Length = 705

 Score =  243 bits (620), Expect = 1e-62
 Identities = 113/160 (70%), Positives = 136/160 (85%)
 Frame = +3

Query: 3   YAQNGKGSEALALFSRMLRSGERPDHVTMIGVLSACSHAGMVEEGQRYFYSMTQEHGLVP 182
           YAQNG G+ AL +F +ML SG++PDHVTMIGVLSACSHAG+VEEG+RYF+SM  E GL P
Sbjct: 467 YAQNGYGTNALEIFRKMLVSGQKPDHVTMIGVLSACSHAGLVEEGRRYFHSMRTELGLAP 526

Query: 183 SKDHYTCMVDLLGRAGCVREAKKFIESMPMEADTVLWGSLLASCKVHGNLEMGTHVAEKL 362
            KDH+TCMVDLLGRAGC+ EA   I++MPM+ D V+WGSLLA+CKVHGN+E+G +VAEKL
Sbjct: 527 MKDHFTCMVDLLGRAGCLDEANDLIQTMPMQPDNVVWGSLLAACKVHGNIELGKYVAEKL 586

Query: 363 LEFDPSNSGPYVLLSNMYAELKQWGEVARVRTLMRRRGVV 482
           +E DP NSGPYVLLSNMYAEL +W +V RVR  MR+RGV+
Sbjct: 587 MEIDPLNSGPYVLLSNMYAELGRWKDVVRVRKQMRQRGVI 626