BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00035571
         (411 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAD37021.1| putative non-LTR retrolelement reverse transcript...    93   3e-17
gb|ABD32279.2| reverse transcriptase, putative [Medicago truncat...    92   6e-17
ref|XP_003566324.1| PREDICTED: putative ribonuclease H protein A...    86   4e-15
emb|CAN78577.1| hypothetical protein VITISV_020585 [Vitis vinifera]    85   5e-15
emb|CAN80388.1| hypothetical protein VITISV_000106 [Vitis vinifera]    84   9e-15

>gb|AAD37021.1| putative non-LTR retrolelement reverse transcriptase [Arabidopsis
           thaliana]
          Length = 732

 Score = 92.8 bits (229), Expect = 3e-17
 Identities = 47/136 (34%), Positives = 74/136 (54%), Gaps = 8/136 (5%)
 Frame = -1

Query: 387 IIRNFIWSGNPTQRKAITVSWEKACKPSEEGGLGLRRFQDINLSMLMKQAWSLLTE-EGD 211
           + R+F+W  + TQRK   +SW++ CKP  EGGLG+R+ QD+N ++L K  W L+ +    
Sbjct: 346 VSRSFLWGSSVTQRKQHLISWKRVCKPRSEGGLGIRKAQDMNKALLSKVGWRLIQDYHSL 405

Query: 210 WATFMKGKY---TNRAGGWTNYKT--STVWNGIKWALCEMDHLHG--WTVGNGKSINLWR 52
           WA  M+  Y     R G WT  ++  S+ W  +   + E+  + G  W +G+G+ I  W 
Sbjct: 406 WARIMRCNYRVQDVRDGAWTKVRSVCSSTWRSVALGMREV-VIPGLSWVIGDGREILFWM 464

Query: 51  GNWLLQKPLCDFFQEE 4
             WL   PL +   +E
Sbjct: 465 DKWLTNIPLAELLVQE 480


>gb|ABD32279.2| reverse transcriptase, putative [Medicago truncatula]
          Length = 480

 Score = 91.7 bits (226), Expect = 6e-17
 Identities = 44/115 (38%), Positives = 61/115 (53%)
 Frame = -1

Query: 384 IRNFIWSGNPTQRKAITVSWEKACKPSEEGGLGLRRFQDINLSMLMKQAWSLLTEEGDWA 205
           I+NFIWSG+    K  TVSW+  C+P   GGL ++    IN S+++  AW   T +  WA
Sbjct: 296 IKNFIWSGDIYTHKVCTVSWKVMCRPWAAGGLDIKPTCLINESLILLLAWQFSTADSQWA 355

Query: 204 TFMKGKYTNRAGGWTNYKTSTVWNGIKWALCEMDHLHGWTVGNGKSINLWRGNWL 40
             M  ++        +Y  S++W GIK  L  +     W VG G +INLW  NWL
Sbjct: 356 ALMHHRFLKHGTPLQHYFLSSMWGGIKEHLSTISSNSIWIVGTGANINLWTDNWL 410


>ref|XP_003566324.1| PREDICTED: putative ribonuclease H protein At1g65750-like
           [Brachypodium distachyon]
          Length = 776

 Score = 85.5 bits (210), Expect = 4e-15
 Identities = 43/120 (35%), Positives = 65/120 (54%), Gaps = 4/120 (3%)
 Frame = -1

Query: 387 IIRNFIWSGNPTQRKAITVSWEKACKPSEEGGLGLRRFQDINLSMLMKQAWSLLTEEGDW 208
           + RNF+W     +RK   ++WEK  +P  +GG+G R     N ++L KQAW L+ +   +
Sbjct: 17  LTRNFLWGDEENKRKVHWLAWEKMIQPKSKGGMGFRDMALFNQALLAKQAWRLIDKPDSF 76

Query: 207 -ATFMKGKY---TNRAGGWTNYKTSTVWNGIKWALCEMDHLHGWTVGNGKSINLWRGNWL 40
            A  +K KY    N         +S VW GIK  L  +   + W +GNG+S+++WR NWL
Sbjct: 77  CARLIKAKYFPHGNLLDTAVIQSSSPVWQGIKHGLDLLKKGYIWRIGNGRSVDIWRHNWL 136


>emb|CAN78577.1| hypothetical protein VITISV_020585 [Vitis vinifera]
          Length = 1848

 Score = 85.1 bits (209), Expect = 5e-15
 Identities = 42/131 (32%), Positives = 66/131 (50%), Gaps = 6/131 (4%)
 Frame = -1

Query: 387  IIRNFIWSGNPTQRKAITVSWEKACKPSEEGGLGLRRFQDINLSMLMKQAWSLLTE-EGD 211
            I R+F+W G   +RK   V W+  C   ++GGLG++   ++N ++L K  W    E E  
Sbjct: 1459 IQRDFLWGGGSLERKPHLVRWKVVCLSKKKGGLGIKCLSNLNKALLSKWNWRYANEREAL 1518

Query: 210  WATFMKGKYTNRAGGWTNYKTST-----VWNGIKWALCEMDHLHGWTVGNGKSINLWRGN 46
            W   ++GKY    GGW+  +        +W GI+     +     ++VGNG+ ++ WR  
Sbjct: 1519 WNQVIRGKYGEDRGGWSTREVREAHGVGLWKGIRMDWDLVGARISFSVGNGRRVSFWRDR 1578

Query: 45   WLLQKPLCDFF 13
            W    PLCD F
Sbjct: 1579 WCGXAPLCDSF 1589


>emb|CAN80388.1| hypothetical protein VITISV_000106 [Vitis vinifera]
          Length = 1130

 Score = 84.3 bits (207), Expect = 9e-15
 Identities = 42/131 (32%), Positives = 64/131 (48%), Gaps = 6/131 (4%)
 Frame = -1

Query: 387  IIRNFIWSGNPTQRKAITVSWEKACKPSEEGGLGLRRFQDINLSMLMKQAWSLLTE-EGD 211
            I R+F+W G   +RK   V WE  C   ++GGLG++    +N ++L K  W    E E  
Sbjct: 930  IQRDFLWGGGNLERKPHLVRWEVVCLSKKKGGLGVKNLSILNKALLAKWNWRFANEREAL 989

Query: 210  WATFMKGKYTNRAGGWTNYKTST-----VWNGIKWALCEMDHLHGWTVGNGKSINLWRGN 46
            W   ++GKY    GGW++ +        +W GI+     + +   + VGNG+ +  WR  
Sbjct: 990  WNQVIRGKYGEERGGWSSREVREAHGLGLWKGIRMNWELVSNRLVFIVGNGRRVRFWRDK 1049

Query: 45   WLLQKPLCDFF 13
            W    PLC  F
Sbjct: 1050 WCGDSPLCSSF 1060