BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00034747
         (276 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAF79618.1|AC027665_19 F5M15.26 [Arabidopsis thaliana]             122   4e-26
gb|AAD22283.1| putative retroelement pol polyprotein [Arabidopsi...   118   4e-25
gb|AAD15474.1| putative retroelement pol polyprotein [Arabidopsi...   116   2e-24
gb|AAD20101.1| putative retroelement pol polyprotein [Arabidopsi...   115   3e-24
gb|AFU25705.1| gag-pol precursor [Castanea mollissima]                115   5e-24

>gb|AAF79618.1|AC027665_19 F5M15.26 [Arabidopsis thaliana]
          Length = 1838

 Score =  122 bits (305), Expect = 4e-26
 Identities = 54/85 (63%), Positives = 72/85 (84%)
 Frame = -2

Query: 257  FNIFKEFKMKLNPAKCTFGVSSGKFLGYIVTRRGIDANPDQIRAIQEMSSPTSRKQIQKL 78
            F++   + MKLNP KCTFGV+SG+FLGY+VT+RGI+ANP QIRAI E+ SP + +++Q+L
Sbjct: 999  FDVLNTYGMKLNPTKCTFGVTSGEFLGYVVTKRGIEANPKQIRAILELPSPRNAREVQRL 1058

Query: 77   NGRIAALNRFISRTSDRCKPLYSLL 3
             GRIAALNRFISR++D+C P Y+LL
Sbjct: 1059 TGRIAALNRFISRSTDKCLPFYNLL 1083


>gb|AAD22283.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 1787

 Score =  118 bits (296), Expect = 4e-25
 Identities = 53/85 (62%), Positives = 70/85 (82%)
 Frame = -2

Query: 257  FNIFKEFKMKLNPAKCTFGVSSGKFLGYIVTRRGIDANPDQIRAIQEMSSPTSRKQIQKL 78
            F +   + MKLNP+KCTFGV+SG+FLGY+VTRRGI+ANP QI AI ++ SP + +++Q+L
Sbjct: 957  FQVLNRYNMKLNPSKCTFGVTSGEFLGYLVTRRGIEANPKQISAIIDLPSPRNTREVQRL 1016

Query: 77   NGRIAALNRFISRTSDRCKPLYSLL 3
             GRIAALNRFISR++D+C P Y LL
Sbjct: 1017 IGRIAALNRFISRSTDKCLPFYQLL 1041


>gb|AAD15474.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 1466

 Score =  116 bits (291), Expect = 2e-24
 Identities = 54/85 (63%), Positives = 69/85 (81%)
 Frame = -2

Query: 257 FNIFKEFKMKLNPAKCTFGVSSGKFLGYIVTRRGIDANPDQIRAIQEMSSPTSRKQIQKL 78
           F I  +++MKLNPAKCTFGV SG+FLGYIVT+RGI+ANP+QI A   M SP + K++Q+L
Sbjct: 639 FAILNQYQMKLNPAKCTFGVPSGEFLGYIVTKRGIEANPNQINAFLNMPSPKNFKEVQRL 698

Query: 77  NGRIAALNRFISRTSDRCKPLYSLL 3
            GRIAALNRFISR++D+  P Y +L
Sbjct: 699 TGRIAALNRFISRSTDKSLPFYQIL 723


>gb|AAD20101.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 764

 Score =  115 bits (289), Expect = 3e-24
 Identities = 52/85 (61%), Positives = 69/85 (81%)
 Frame = -2

Query: 257 FNIFKEFKMKLNPAKCTFGVSSGKFLGYIVTRRGIDANPDQIRAIQEMSSPTSRKQIQKL 78
           F    ++ MKLNPAKC FGV+SG+FLGYIVT+RGI+ANP QIRAI ++ SP ++K++Q+L
Sbjct: 672 FETLNKYNMKLNPAKCLFGVTSGEFLGYIVTKRGIEANPKQIRAILDLQSPRNKKEVQRL 731

Query: 77  NGRIAALNRFISRTSDRCKPLYSLL 3
            GRIA LNRFI+R++D+  P Y LL
Sbjct: 732 TGRIAGLNRFIARSTDKSLPFYQLL 756


>gb|AFU25705.1| gag-pol precursor [Castanea mollissima]
          Length = 1106

 Score =  115 bits (287), Expect = 5e-24
 Identities = 51/91 (56%), Positives = 71/91 (78%)
 Frame = -2

Query: 275 RDLGIVFNIFKEFKMKLNPAKCTFGVSSGKFLGYIVTRRGIDANPDQIRAIQEMSSPTSR 96
           +DL   F++ ++ K++LN +KC+FGV SGKFLGY++T RGI+ NPDQI+AI E+  P + 
Sbjct: 262 KDLHETFSVLRKHKLRLNASKCSFGVDSGKFLGYMITHRGIEFNPDQIKAILELHPPRNP 321

Query: 95  KQIQKLNGRIAALNRFISRTSDRCKPLYSLL 3
           K++QKL G  A LNRFISR++DRC+P Y LL
Sbjct: 322 KEVQKLAGMFAVLNRFISRSADRCRPFYRLL 352