BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00034447
         (316 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002277780.1| PREDICTED: DEAD-box ATP-dependent RNA helica...   174   5e-42
emb|CBI26203.3| unnamed protein product [Vitis vinifera]              174   5e-42
gb|AAG34873.1|AF261020_1 putative chloroplast RNA helicase VDL i...   161   6e-38
ref|XP_002871872.1| hypothetical protein ARALYDRAFT_488806 [Arab...   159   3e-37
ref|NP_974812.1| DEAD-box ATP-dependent RNA helicase 58 [Arabido...   158   5e-37

>ref|XP_002277780.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 58,
           chloroplastic-like [Vitis vinifera]
          Length = 482

 Score =  174 bits (442), Expect = 5e-42
 Identities = 88/105 (83%), Positives = 96/105 (91%)
 Frame = +1

Query: 1   EVGFVEPTDVQREALPILLSGRDCILHAQTGSGKTLAYLLLIFSVINVQRSTVQALIVVP 180
           EVGF+ PTDVQ++ALP+LLSGRDCILHAQTGSGKTL YLLLIFSV+N + S VQALIVVP
Sbjct: 96  EVGFIVPTDVQQQALPVLLSGRDCILHAQTGSGKTLTYLLLIFSVVNTKISAVQALIVVP 155

Query: 181 TRELGTQVAKVARMLAAKPVELELEGKTCTVMALLDGGMLKRHKS 315
           TRELG QV KVARMLAAKP+E ELE K+CTVMALLDGGMLKRHKS
Sbjct: 156 TRELGIQVTKVARMLAAKPMEPELEQKSCTVMALLDGGMLKRHKS 200


>emb|CBI26203.3| unnamed protein product [Vitis vinifera]
          Length = 486

 Score =  174 bits (442), Expect = 5e-42
 Identities = 88/105 (83%), Positives = 96/105 (91%)
 Frame = +1

Query: 1   EVGFVEPTDVQREALPILLSGRDCILHAQTGSGKTLAYLLLIFSVINVQRSTVQALIVVP 180
           EVGF+ PTDVQ++ALP+LLSGRDCILHAQTGSGKTL YLLLIFSV+N + S VQALIVVP
Sbjct: 100 EVGFIVPTDVQQQALPVLLSGRDCILHAQTGSGKTLTYLLLIFSVVNTKISAVQALIVVP 159

Query: 181 TRELGTQVAKVARMLAAKPVELELEGKTCTVMALLDGGMLKRHKS 315
           TRELG QV KVARMLAAKP+E ELE K+CTVMALLDGGMLKRHKS
Sbjct: 160 TRELGIQVTKVARMLAAKPMEPELEQKSCTVMALLDGGMLKRHKS 204


>gb|AAG34873.1|AF261020_1 putative chloroplast RNA helicase VDL isoform 1 [Nicotiana tabacum]
           gi|11385590|gb|AAG34876.1|AF261021_1 putative
           chloroplast RNA helicase VDL isoform 1 [Nicotiana
           tabacum]
          Length = 466

 Score =  161 bits (407), Expect = 6e-38
 Identities = 84/105 (80%), Positives = 90/105 (85%)
 Frame = +1

Query: 1   EVGFVEPTDVQREALPILLSGRDCILHAQTGSGKTLAYLLLIFSVINVQRSTVQALIVVP 180
           EVG+V PT+VQ +ALP L SGRDC+LHAQTGSGKTLAYLL I SVI+ QRS VQALIVVP
Sbjct: 84  EVGYVIPTEVQLQALPFLYSGRDCVLHAQTGSGKTLAYLLQILSVIDSQRSAVQALIVVP 143

Query: 181 TRELGTQVAKVARMLAAKPVELELEGKTCTVMALLDGGMLKRHKS 315
           TRELG QV KVARMLAAKP ELE   K+CTVMALLDGGML RHKS
Sbjct: 144 TRELGMQVTKVARMLAAKPSELESGPKSCTVMALLDGGMLNRHKS 188


>ref|XP_002871872.1| hypothetical protein ARALYDRAFT_488806 [Arabidopsis lyrata subsp.
           lyrata] gi|297317709|gb|EFH48131.1| hypothetical protein
           ARALYDRAFT_488806 [Arabidopsis lyrata subsp. lyrata]
          Length = 473

 Score =  159 bits (401), Expect = 3e-37
 Identities = 81/105 (77%), Positives = 91/105 (86%)
 Frame = +1

Query: 1   EVGFVEPTDVQREALPILLSGRDCILHAQTGSGKTLAYLLLIFSVINVQRSTVQALIVVP 180
           E+GF+ PTD+QREALP L +GRDCILHAQTGSGKTL YLLLIFS+IN QRS+VQA+IVVP
Sbjct: 94  EIGFISPTDIQREALPTLFTGRDCILHAQTGSGKTLTYLLLIFSLINPQRSSVQAVIVVP 153

Query: 181 TRELGTQVAKVARMLAAKPVELELEGKTCTVMALLDGGMLKRHKS 315
           TRELG QV KVARMLAAK    E++ K CTVMALLDGG L+RHKS
Sbjct: 154 TRELGMQVTKVARMLAAKS---EIDVKGCTVMALLDGGTLRRHKS 195


>ref|NP_974812.1| DEAD-box ATP-dependent RNA helicase 58 [Arabidopsis thaliana]
           gi|108861900|sp|Q3E9C3.1|RH58_ARATH RecName:
           Full=DEAD-box ATP-dependent RNA helicase 58,
           chloroplastic; Flags: Precursor
           gi|332005287|gb|AED92670.1| DEAD-box ATP-dependent RNA
           helicase 58 [Arabidopsis thaliana]
          Length = 472

 Score =  158 bits (399), Expect = 5e-37
 Identities = 82/105 (78%), Positives = 91/105 (86%)
 Frame = +1

Query: 1   EVGFVEPTDVQREALPILLSGRDCILHAQTGSGKTLAYLLLIFSVINVQRSTVQALIVVP 180
           E+GFV PTD+QREALP L +GRDCILHAQTGSGKTL YLLLIFS+IN QRS+VQA+IVVP
Sbjct: 93  EIGFVFPTDIQREALPTLFTGRDCILHAQTGSGKTLTYLLLIFSLINPQRSSVQAVIVVP 152

Query: 181 TRELGTQVAKVARMLAAKPVELELEGKTCTVMALLDGGMLKRHKS 315
           TRELG QV KVARMLAAK    E++ K CTVMALLDGG L+RHKS
Sbjct: 153 TRELGMQVTKVARMLAAKS---EIDVKGCTVMALLDGGTLRRHKS 194