BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00034377
         (394 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002284611.2| PREDICTED: DNA topoisomerase 2-binding prote...   113   1e-23
ref|XP_002520311.1| topbp1, putative [Ricinus communis] gi|22354...   113   2e-23
emb|CBI18968.3| unnamed protein product [Vitis vinifera]              108   6e-22
ref|XP_003548358.1| PREDICTED: DNA topoisomerase 2-binding prote...    88   6e-16
ref|XP_002887677.1| MEI1 protein [Arabidopsis lyrata subsp. lyra...    74   9e-12

>ref|XP_002284611.2| PREDICTED: DNA topoisomerase 2-binding protein 1-B-like [Vitis
            vinifera]
          Length = 962

 Score =  113 bits (283), Expect = 1e-23
 Identities = 62/125 (49%), Positives = 77/125 (61%), Gaps = 3/125 (2%)
 Frame = -2

Query: 366  KVDSMRNNIAVDVTEASHSVPDVAAAIEDLLAQSNKIQDMATQGDQSVSDQ---SSLTVN 196
            K++S    I     E SH VPDVAAAIEDLL Q++KI D+ + G           SLT+ 
Sbjct: 818  KMNSSGTTITAVTEETSHVVPDVAAAIEDLLEQTSKIHDLKSPGRTGCEKHVSLESLTIE 877

Query: 195  MQIISPDHSKFGQDHVDSRSAFGVFKHWKSRTDKQDDLYNPSGQVNQGPYDVFSETQTES 16
             Q+ S D S  GQDH DS S+F + KHW +R +K+DD+ NP G V    YD FSETQTES
Sbjct: 878  -QLFSSDCSPLGQDHADSHSSFDLSKHWLNRIEKKDDICNPPGDVKASTYDGFSETQTES 936

Query: 15   QVVSH 1
            QVV +
Sbjct: 937  QVVGY 941


>ref|XP_002520311.1| topbp1, putative [Ricinus communis] gi|223540530|gb|EEF42097.1|
            topbp1, putative [Ricinus communis]
          Length = 950

 Score =  113 bits (282), Expect = 2e-23
 Identities = 61/128 (47%), Positives = 81/128 (63%), Gaps = 1/128 (0%)
 Frame = -2

Query: 387  HEKVPTVKVDSMRNNIAVDVTEASHSVPDVAAAIEDLLAQSNKIQDMATQGDQSVSDQSS 208
            H   P   ++S R N + D   +SH VPDVAAAIEDLL Q++KI D  + G    S  +S
Sbjct: 800  HLDDPVYTINSTRGNDSKDTAGSSHGVPDVAAAIEDLLEQTSKIHDQKSLGKSEYSMFAS 859

Query: 207  L-TVNMQIISPDHSKFGQDHVDSRSAFGVFKHWKSRTDKQDDLYNPSGQVNQGPYDVFSE 31
            + ++ ++ + P     G+DH  S S  GV  HW +RT K+DDL NPS +VN+G YD F+E
Sbjct: 860  VESLTIEQLYPSDPILGEDHGGSHSVIGVPNHWLNRTGKRDDLSNPSREVNRGVYDNFTE 919

Query: 30   TQTESQVV 7
            TQTESQVV
Sbjct: 920  TQTESQVV 927


>emb|CBI18968.3| unnamed protein product [Vitis vinifera]
          Length = 952

 Score =  108 bits (269), Expect = 6e-22
 Identities = 58/122 (47%), Positives = 72/122 (59%)
 Frame = -2

Query: 366  KVDSMRNNIAVDVTEASHSVPDVAAAIEDLLAQSNKIQDMATQGDQSVSDQSSLTVNMQI 187
            K++S    I     E SH VPDVAAAIEDLL Q++KI D+ + G               +
Sbjct: 818  KMNSSGTTITAVTEETSHVVPDVAAAIEDLLEQTSKIHDLKSPGRTGCEKH--------L 869

Query: 186  ISPDHSKFGQDHVDSRSAFGVFKHWKSRTDKQDDLYNPSGQVNQGPYDVFSETQTESQVV 7
             S D S  GQDH DS S+F + KHW +R +K+DD+ NP G V    YD FSETQTESQVV
Sbjct: 870  FSSDCSPLGQDHADSHSSFDLSKHWLNRIEKKDDICNPPGDVKASTYDGFSETQTESQVV 929

Query: 6    SH 1
             +
Sbjct: 930  GY 931


>ref|XP_003548358.1| PREDICTED: DNA topoisomerase 2-binding protein 1-A-like [Glycine max]
          Length = 970

 Score = 88.2 bits (217), Expect = 6e-16
 Identities = 50/117 (42%), Positives = 72/117 (61%)
 Frame = -2

Query: 351  RNNIAVDVTEASHSVPDVAAAIEDLLAQSNKIQDMATQGDQSVSDQSSLTVNMQIISPDH 172
            ++N+ +D  EA H+VPDVAAAIEDLL Q++K+ D  +   Q+  ++S       I   D 
Sbjct: 841  KDNMLIDAGEAFHAVPDVAAAIEDLLEQTSKMHDQRSPA-QTGCERS-------IYPSDR 892

Query: 171  SKFGQDHVDSRSAFGVFKHWKSRTDKQDDLYNPSGQVNQGPYDVFSETQTESQVVSH 1
            S   +D+ +  + FG+ KHW +R+ ++DD    S     G YD FSETQTESQVVS+
Sbjct: 893  SVLSEDNSNPHTVFGLSKHWLNRSGRKDDNGEASQDRRAGIYDGFSETQTESQVVSY 949


>ref|XP_002887677.1| MEI1 protein [Arabidopsis lyrata subsp. lyrata]
            gi|297333518|gb|EFH63936.1| MEI1 protein [Arabidopsis
            lyrata subsp. lyrata]
          Length = 970

 Score = 74.3 bits (181), Expect = 9e-12
 Identities = 42/107 (39%), Positives = 60/107 (56%)
 Frame = -2

Query: 321  ASHSVPDVAAAIEDLLAQSNKIQDMATQGDQSVSDQSSLTVNMQIISPDHSKFGQDHVDS 142
            +   VPDVA  IEDLL Q++KIQD  + G   +S+++  + + Q  + +H          
Sbjct: 856  SGREVPDVADTIEDLLEQTSKIQDQKSPG--MISEKTHFSTSEQYNTGNHC--------- 904

Query: 141  RSAFGVFKHWKSRTDKQDDLYNPSGQVNQGPYDVFSETQTESQVVSH 1
                G+ +HW +R  K DD+ +P G V  G Y  FSETQTESQVV +
Sbjct: 905  --VTGLSRHWINRVQKNDDMGSPPGDVTTGTYGNFSETQTESQVVGY 949