BLASTX nr result
ID: Coptis21_contig00034353
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis21_contig00034353
(357 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_004163029.1| PREDICTED: pentatricopeptide repeat-containi... 155 3e-36
ref|XP_004148338.1| PREDICTED: pentatricopeptide repeat-containi... 155 4e-36
ref|XP_002266689.1| PREDICTED: pentatricopeptide repeat-containi... 152 2e-35
ref|XP_002318172.1| predicted protein [Populus trichocarpa] gi|2... 151 6e-35
emb|CAN61593.1| hypothetical protein VITISV_030555 [Vitis vinifera] 143 2e-32
>ref|XP_004163029.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g34400-like [Cucumis sativus]
Length = 619
Score = 155 bits (392), Expect = 3e-36
Identities = 73/117 (62%), Positives = 90/117 (76%)
Frame = -1
Query: 351 PDSTVLASILSACANLGALDQGKWIHAYIDKNQMQIDEVLGCSLVDMYAKCGRIDDALRI 172
PD L ILSACA++GALD GK + Y + Q D +G +LVDMYAKCG +D+A R+
Sbjct: 327 PDQITLIGILSACASIGALDLGKQVEIYASERGFQDDVYVGTALVDMYAKCGSLDNAFRV 386
Query: 171 FNGMPEKNVVSWNSMISAFAFHGRAQEAISLFKCMLEEDGTICPNDITFVGVLSACM 1
F GMP+KN VSWN+MISA AFHG+AQEA++LFK M+ E GT+ PNDITFVGVLSAC+
Sbjct: 387 FYGMPKKNEVSWNAMISALAFHGQAQEALALFKSMMNEGGTVSPNDITFVGVLSACV 443
Score = 101 bits (251), Expect = 7e-20
Identities = 47/116 (40%), Positives = 75/116 (64%)
Frame = -1
Query: 351 PDSTVLASILSACANLGALDQGKWIHAYIDKNQMQIDEVLGCSLVDMYAKCGRIDDALRI 172
P+ L S+L AC LG L G W+ ++ +N+M ++ +G +L+ MY KCG + A RI
Sbjct: 226 PNEMSLVSVLGACGELGDLKLGTWVEEFVVENKMTLNYFMGSALIHMYGKCGDLVSARRI 285
Query: 171 FNGMPEKNVVSWNSMISAFAFHGRAQEAISLFKCMLEEDGTICPNDITFVGVLSAC 4
F+ M +K+ V+WN+MI+ +A +G ++EAI LF+ M + P+ IT +G+LSAC
Sbjct: 286 FDSMKKKDKVTWNAMITGYAQNGMSEEAIKLFQDM--RMSSTAPDQITLIGILSAC 339
Score = 84.3 bits (207), Expect = 9e-15
Identities = 42/116 (36%), Positives = 72/116 (62%)
Frame = -1
Query: 351 PDSTVLASILSACANLGALDQGKWIHAYIDKNQMQIDEVLGCSLVDMYAKCGRIDDALRI 172
P++ + AC+NL A++ G+ H + + + D + SL+ MYA+CG++ DA ++
Sbjct: 125 PNNLTYPFLFIACSNLLAVENGRMGHCSVIRRGLDEDGHVSHSLITMYARCGKMGDARKV 184
Query: 171 FNGMPEKNVVSWNSMISAFAFHGRAQEAISLFKCMLEEDGTICPNDITFVGVLSAC 4
F+ + +K++VSWNSMIS ++ A EA+ LF+ M+E PN+++ V VL AC
Sbjct: 185 FDEISQKDLVSWNSMISGYSKMRHAGEAVGLFREMME--AGFQPNEMSLVSVLGAC 238
>ref|XP_004148338.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g34400-like [Cucumis sativus]
Length = 619
Score = 155 bits (391), Expect = 4e-36
Identities = 73/117 (62%), Positives = 89/117 (76%)
Frame = -1
Query: 351 PDSTVLASILSACANLGALDQGKWIHAYIDKNQMQIDEVLGCSLVDMYAKCGRIDDALRI 172
PD L ILSACA++GALD GK + Y + Q D +G +LVDMYAKCG +D+A R+
Sbjct: 327 PDQITLIGILSACASIGALDLGKQVEIYASERGFQDDVYVGTALVDMYAKCGSLDNAFRV 386
Query: 171 FNGMPEKNVVSWNSMISAFAFHGRAQEAISLFKCMLEEDGTICPNDITFVGVLSACM 1
F GMP KN VSWN+MISA AFHG+AQEA++LFK M+ E GT+ PNDITFVGVLSAC+
Sbjct: 387 FYGMPNKNEVSWNAMISALAFHGQAQEALALFKSMMNEGGTVSPNDITFVGVLSACV 443
Score = 101 bits (251), Expect = 7e-20
Identities = 47/116 (40%), Positives = 75/116 (64%)
Frame = -1
Query: 351 PDSTVLASILSACANLGALDQGKWIHAYIDKNQMQIDEVLGCSLVDMYAKCGRIDDALRI 172
P+ L S+L AC LG L G W+ ++ +N+M ++ +G +L+ MY KCG + A RI
Sbjct: 226 PNEMSLVSVLGACGELGDLKLGTWVEEFVVENKMTLNYFMGSALIHMYGKCGDLVSARRI 285
Query: 171 FNGMPEKNVVSWNSMISAFAFHGRAQEAISLFKCMLEEDGTICPNDITFVGVLSAC 4
F+ M +K+ V+WN+MI+ +A +G ++EAI LF+ M + P+ IT +G+LSAC
Sbjct: 286 FDSMKKKDKVTWNAMITGYAQNGMSEEAIKLFQDM--RMSSTAPDQITLIGILSAC 339
Score = 84.3 bits (207), Expect = 9e-15
Identities = 42/116 (36%), Positives = 72/116 (62%)
Frame = -1
Query: 351 PDSTVLASILSACANLGALDQGKWIHAYIDKNQMQIDEVLGCSLVDMYAKCGRIDDALRI 172
P++ + AC+NL A++ G+ H + + + D + SL+ MYA+CG++ DA ++
Sbjct: 125 PNNLTYPFLFIACSNLLAVENGRMGHCSVIRRGLDEDGHVSHSLITMYARCGKMGDARKV 184
Query: 171 FNGMPEKNVVSWNSMISAFAFHGRAQEAISLFKCMLEEDGTICPNDITFVGVLSAC 4
F+ + +K++VSWNSMIS ++ A EA+ LF+ M+E PN+++ V VL AC
Sbjct: 185 FDEISQKDLVSWNSMISGYSKMRHAGEAVGLFREMME--AGFQPNEMSLVSVLGAC 238
>ref|XP_002266689.1| PREDICTED: pentatricopeptide repeat-containing protein At2g34400
[Vitis vinifera] gi|296090299|emb|CBI40118.3| unnamed
protein product [Vitis vinifera]
Length = 618
Score = 152 bits (385), Expect = 2e-35
Identities = 70/119 (58%), Positives = 90/119 (75%)
Frame = -1
Query: 357 VIPDSTVLASILSACANLGALDQGKWIHAYIDKNQMQIDEVLGCSLVDMYAKCGRIDDAL 178
V PD L +LSACA++GALD GKW+ Y + +Q D + +L+DMYAKCG +DDAL
Sbjct: 324 VNPDKITLVGVLSACASIGALDFGKWLDTYASERGLQNDIYVSTALIDMYAKCGSLDDAL 383
Query: 177 RIFNGMPEKNVVSWNSMISAFAFHGRAQEAISLFKCMLEEDGTICPNDITFVGVLSACM 1
R+F MP+KN VSWN+MISA AFHGR QE++SLFK M +E G + PNDI+F+GVLSAC+
Sbjct: 384 RVFEDMPQKNEVSWNAMISALAFHGRPQESLSLFKRMSKEGGAVRPNDISFIGVLSACV 442
Score = 108 bits (270), Expect = 5e-22
Identities = 53/116 (45%), Positives = 76/116 (65%)
Frame = -1
Query: 351 PDSTVLASILSACANLGALDQGKWIHAYIDKNQMQIDEVLGCSLVDMYAKCGRIDDALRI 172
PD L SIL AC +LG L G WI ++ +N+M ++ +G +L+ MY KCG + A R+
Sbjct: 225 PDEMTLVSILGACGDLGDLGLGSWIEGFVVENEMDLNSFVGSALIGMYGKCGDLSSARRV 284
Query: 171 FNGMPEKNVVSWNSMISAFAFHGRAQEAISLFKCMLEEDGTICPNDITFVGVLSAC 4
F+ M +K+VV+WN+MI+ +A +G + EAI LF M E + P+ IT VGVLSAC
Sbjct: 285 FDRMVKKDVVTWNAMITGYAQNGVSDEAIILFSGMRESG--VNPDKITLVGVLSAC 338
Score = 80.5 bits (197), Expect = 1e-13
Identities = 43/116 (37%), Positives = 70/116 (60%)
Frame = -1
Query: 351 PDSTVLASILSACANLGALDQGKWIHAYIDKNQMQIDEVLGCSLVDMYAKCGRIDDALRI 172
P++ + ACANL L+ G+ H+ + K+ + D + SL+ MY++CG + A R+
Sbjct: 124 PNNFTYPFVFIACANLLVLNHGQCAHSGVLKSGLCADGHVRHSLITMYSRCGELGCARRV 183
Query: 171 FNGMPEKNVVSWNSMISAFAFHGRAQEAISLFKCMLEEDGTICPNDITFVGVLSAC 4
F+ + EK++VSWNSMIS ++ G A +A+ LF M D P+++T V +L AC
Sbjct: 184 FDEISEKDLVSWNSMISGYSRMGYAGDAVGLFGEM--RDAGFEPDEMTLVSILGAC 237
>ref|XP_002318172.1| predicted protein [Populus trichocarpa] gi|222858845|gb|EEE96392.1|
predicted protein [Populus trichocarpa]
Length = 617
Score = 151 bits (381), Expect = 6e-35
Identities = 66/117 (56%), Positives = 90/117 (76%)
Frame = -1
Query: 351 PDSTVLASILSACANLGALDQGKWIHAYIDKNQMQIDEVLGCSLVDMYAKCGRIDDALRI 172
PD + +LSAC+ +GALD GKW+ + + +Q D + +L+DMYAKCG +DDA+R+
Sbjct: 328 PDRVTMIEVLSACSTIGALDLGKWVETHASEKGLQHDVYVASALIDMYAKCGSLDDAVRV 387
Query: 171 FNGMPEKNVVSWNSMISAFAFHGRAQEAISLFKCMLEEDGTICPNDITFVGVLSACM 1
F MP KN VSWN+MISA AFHG+AQEA+SLF+ M +++GT+ PNDITF+GVLSAC+
Sbjct: 388 FESMPHKNEVSWNAMISALAFHGQAQEALSLFRRMSKDNGTVQPNDITFIGVLSACV 444
Score = 105 bits (262), Expect = 4e-21
Identities = 48/116 (41%), Positives = 76/116 (65%)
Frame = -1
Query: 351 PDSTVLASILSACANLGALDQGKWIHAYIDKNQMQIDEVLGCSLVDMYAKCGRIDDALRI 172
PD L S+L AC +LG L G+W+ ++ + +M+++ +G +L+DMY KCG + A R+
Sbjct: 227 PDEMTLVSVLGACGDLGDLGLGRWVEGFVLEKKMEVNSYMGSALIDMYGKCGDLISARRV 286
Query: 171 FNGMPEKNVVSWNSMISAFAFHGRAQEAISLFKCMLEEDGTICPNDITFVGVLSAC 4
F+ MP K+VV+WN++I+ +A +G + EAI LF M E P+ +T + VLSAC
Sbjct: 287 FDSMPNKDVVTWNAIITGYAQNGASNEAIVLFNGMREAGPH--PDRVTMIEVLSAC 340
Score = 80.5 bits (197), Expect = 1e-13
Identities = 44/105 (41%), Positives = 64/105 (60%)
Frame = -1
Query: 318 ACANLGALDQGKWIHAYIDKNQMQIDEVLGCSLVDMYAKCGRIDDALRIFNGMPEKNVVS 139
AC N+ L GK H + K + DE + SL+ MYA+CG + A ++F+ M ++++VS
Sbjct: 137 ACGNVRGLVHGKIGHCLVFKAGLDGDEYVNHSLITMYARCGEMGFARKVFDEMGDRDLVS 196
Query: 138 WNSMISAFAFHGRAQEAISLFKCMLEEDGTICPNDITFVGVLSAC 4
WNSMIS ++ G +EAI LF M EE P+++T V VL AC
Sbjct: 197 WNSMISGYSKMGFTKEAIGLFMEMREEG--FEPDEMTLVSVLGAC 239
>emb|CAN61593.1| hypothetical protein VITISV_030555 [Vitis vinifera]
Length = 673
Score = 143 bits (360), Expect = 2e-32
Identities = 72/116 (62%), Positives = 83/116 (71%)
Frame = -1
Query: 351 PDSTVLASILSACANLGALDQGKWIHAYIDKNQMQIDEVLGCSLVDMYAKCGRIDDALRI 172
P VL S+LSACANLGALDQG+WIH Y +N +Q+D VLG SLVDMYAKCGRID A +
Sbjct: 301 PRKFVLPSVLSACANLGALDQGRWIHTYAKRNSIQLDGVLGTSLVDMYAKCGRIDLAWEV 360
Query: 171 FNGMPEKNVVSWNSMISAFAFHGRAQEAISLFKCMLEEDGTICPNDITFVGVLSAC 4
F M K V SWN+MI A HGRA++AI LF M I PN+ITFVGVL+AC
Sbjct: 361 FEKMSNKEVSSWNAMIGGLAMHGRAEDAIDLFSKM-----DIYPNEITFVGVLNAC 411
Score = 55.1 bits (131), Expect = 6e-06
Identities = 31/99 (31%), Positives = 55/99 (55%), Gaps = 1/99 (1%)
Frame = -1
Query: 348 DSTVLASILSACANLGALDQGKWIHAYIDKNQMQIDEVLGCSLVDMYAKCGRIDDALRIF 169
D +L+S + A+ G L + + I +D ++D V +++D Y + G ++ A +F
Sbjct: 172 DGHILSSAIRMYASFGRLVEARRI---LDDKGGEVDAVCWNAMIDGYLRFGEVEAARELF 228
Query: 168 NGMPEKNVVS-WNSMISAFAFHGRAQEAISLFKCMLEED 55
GMP+++++S WN+MIS F+ G + A F M E D
Sbjct: 229 EGMPDRSMISTWNAMISGFSRCGMVEVAREFFDEMKERD 267