BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00034283
         (368 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002269506.1| PREDICTED: pentatricopeptide repeat-containi...   139   2e-31
ref|XP_002533281.1| pentatricopeptide repeat-containing protein,...   130   1e-28
emb|CBI17585.3| unnamed protein product [Vitis vinifera]              129   2e-28
ref|XP_002866749.1| hypothetical protein ARALYDRAFT_920064 [Arab...   121   5e-26
ref|NP_001119513.1| pentatricopeptide repeat-containing protein ...   119   3e-25

>ref|XP_002269506.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66631-like [Vitis vinifera]
          Length = 660

 Score =  139 bits (350), Expect = 2e-31
 Identities = 64/117 (54%), Positives = 81/117 (69%)
 Frame = +3

Query: 18  RELMPDKRIASIGVXXXXXXXXXXXXXXXXXXCRVDGDDVRLKPWLDPGALANALSDWDS 197
           R ++PD+RI ++G                     VDG  V+LKPWLDP ALANAL++WD 
Sbjct: 299 RGMLPDERIKNVGFCVDSSDDDDDENNHSSDDAGVDG--VQLKPWLDPRALANALNNWDP 356

Query: 198 SDVLALENANFVWTTRLVCKMLRRFKKAETAWKFFCWVAYQPGEFTHDVFTISRMIT 368
           ++VLALE A F+WTTRLVCK+LR F   ETAWKFFCWVAYQPG F H+++T+ RM+T
Sbjct: 357 NEVLALEEAKFIWTTRLVCKILRNFNSPETAWKFFCWVAYQPGGFNHNIYTVQRMMT 413


>ref|XP_002533281.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223526906|gb|EEF29113.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 652

 Score =  130 bits (327), Expect = 1e-28
 Identities = 66/118 (55%), Positives = 75/118 (63%), Gaps = 1/118 (0%)
 Frame = +3

Query: 18  RELMPDKRIASIG-VXXXXXXXXXXXXXXXXXXCRVDGDDVRLKPWLDPGALANALSDWD 194
           +E+ PD+RI SIG                       D  +VRLKPWLDP ALANALS W 
Sbjct: 300 KEMFPDERIKSIGSCSDGSDDDEDDYENVNNGDVHTDTSEVRLKPWLDPKALANALSQWS 359

Query: 195 SSDVLALENANFVWTTRLVCKMLRRFKKAETAWKFFCWVAYQPGEFTHDVFTISRMIT 368
              V  LE+A FVWTTRLVCK+LR F   ETAW FFCWVAYQPG FTHDV+T+ RM+T
Sbjct: 360 PEVVSMLEDAKFVWTTRLVCKVLRNFSSPETAWYFFCWVAYQPG-FTHDVYTVQRMMT 416


>emb|CBI17585.3| unnamed protein product [Vitis vinifera]
          Length = 636

 Score =  129 bits (324), Expect = 2e-28
 Identities = 54/76 (71%), Positives = 65/76 (85%)
 Frame = +3

Query: 141 LKPWLDPGALANALSDWDSSDVLALENANFVWTTRLVCKMLRRFKKAETAWKFFCWVAYQ 320
           LKPWLDP ALANAL++WD ++VLALE A F+WTTRLVCK+LR F   ETAWKFFCWVAYQ
Sbjct: 314 LKPWLDPRALANALNNWDPNEVLALEEAKFIWTTRLVCKILRNFNSPETAWKFFCWVAYQ 373

Query: 321 PGEFTHDVFTISRMIT 368
           PG F H+++T+ RM+T
Sbjct: 374 PGGFNHNIYTVQRMMT 389


>ref|XP_002866749.1| hypothetical protein ARALYDRAFT_920064 [Arabidopsis lyrata subsp.
           lyrata] gi|297312584|gb|EFH43008.1| hypothetical protein
           ARALYDRAFT_920064 [Arabidopsis lyrata subsp. lyrata]
          Length = 661

 Score =  121 bits (304), Expect = 5e-26
 Identities = 62/120 (51%), Positives = 72/120 (60%)
 Frame = +3

Query: 6   EGLWRELMPDKRIASIGVXXXXXXXXXXXXXXXXXXCRVDGDDVRLKPWLDPGALANALS 185
           E   RE++PD+RI  I +                    V+   V+LKPWLDP ALA +L 
Sbjct: 301 EEFLREMLPDERIKDISIYSMDNPSDSEEEGDEHND-NVNEGQVKLKPWLDPKALATSLK 359

Query: 186 DWDSSDVLALENANFVWTTRLVCKMLRRFKKAETAWKFFCWVAYQPGEFTHDVFTISRMI 365
            W S  V ALE ANFVWT  LVCKMLR F+  ETAW FFCWVA QPG FTHD +TI RM+
Sbjct: 360 KWSSDAVTALEEANFVWTNLLVCKMLRNFRSPETAWSFFCWVAIQPG-FTHDAYTIERMM 418


>ref|NP_001119513.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|223635653|sp|B3H4P1.1|PP450_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At5g66631 gi|332010859|gb|AED98242.1| pentatricopeptide
           repeat-containing protein [Arabidopsis thaliana]
          Length = 661

 Score =  119 bits (298), Expect = 3e-25
 Identities = 62/120 (51%), Positives = 72/120 (60%)
 Frame = +3

Query: 6   EGLWRELMPDKRIASIGVXXXXXXXXXXXXXXXXXXCRVDGDDVRLKPWLDPGALANALS 185
           E   RE++PD+RI  I +                    V+   V+LKPWLDP ALA +L 
Sbjct: 301 EEFLREMLPDERIKDISMYSMDNPSDSEDEGDEYKD-DVNEAQVKLKPWLDPKALATSLK 359

Query: 186 DWDSSDVLALENANFVWTTRLVCKMLRRFKKAETAWKFFCWVAYQPGEFTHDVFTISRMI 365
            W S  V ALE ANFVWT  LVCKMLR F+  ETAW FFCWVA QPG FTHD +TI RM+
Sbjct: 360 KWSSDAVTALEEANFVWTNLLVCKMLRNFRAPETAWSFFCWVAIQPG-FTHDAYTIERMM 418