BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00034268
         (515 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002515231.1| pentatricopeptide repeat-containing protein,...   201   5e-50
ref|XP_002310039.1| predicted protein [Populus trichocarpa] gi|2...   196   2e-48
ref|XP_002279193.1| PREDICTED: putative pentatricopeptide repeat...   194   5e-48
ref|XP_003518677.1| PREDICTED: putative pentatricopeptide repeat...   191   4e-47
ref|XP_003591356.1| Pentatricopeptide repeat-containing protein ...   191   7e-47

>ref|XP_002515231.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223545711|gb|EEF47215.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 505

 Score =  201 bits (511), Expect = 5e-50
 Identities = 97/125 (77%), Positives = 109/125 (87%)
 Frame = +3

Query: 3   NLYKRMMDAGCLPNTQSCMFLIRLFKKQEKVQMALVLWKDMVEKGFGSYILVSDVLFDLL 182
           +LY+RMM++GCLPNTQSCMFLIRLF+K EKV+MAL LW DMVEKGFGSYILVSDVLFDLL
Sbjct: 368 SLYRRMMESGCLPNTQSCMFLIRLFRKHEKVEMALTLWNDMVEKGFGSYILVSDVLFDLL 427

Query: 183 CDLGKLEEAENCFLQMVEKGHKPSNVSFRRIKVLMELANRHEALKILSKKMGIFGPIVLE 362
           CD+GKL EAE CFLQM+EKGHKPSNVSFRRIKVLMEL N+H+AL  L KKM IFG  +  
Sbjct: 428 CDMGKLVEAEKCFLQMIEKGHKPSNVSFRRIKVLMELVNKHDALLNLQKKMAIFGSSIQL 487

Query: 363 HDRIE 377
            +R E
Sbjct: 488 PEREE 492


>ref|XP_002310039.1| predicted protein [Populus trichocarpa] gi|222852942|gb|EEE90489.1|
           predicted protein [Populus trichocarpa]
          Length = 507

 Score =  196 bits (498), Expect = 2e-48
 Identities = 97/132 (73%), Positives = 112/132 (84%), Gaps = 1/132 (0%)
 Frame = +3

Query: 3   NLYKRMMDAGCLPNTQSCMFLIRLFKKQEKVQMALVLWKDMVEKGFGSYILVSDVLFDLL 182
           + Y RMMDAGCLPNTQSCMFLI+LFK+ EKV+MAL LW DMVEKGFGSYILVSDVL  +L
Sbjct: 372 DFYGRMMDAGCLPNTQSCMFLIKLFKRHEKVEMALQLWNDMVEKGFGSYILVSDVLLGML 431

Query: 183 CDLGKLEEAENCFLQMVEKGHKPSNVSFRRIKVLMELANRHEALKILSKKMGIFGPIVLE 362
           CD+GKL EAE CFLQMVEKGHKPSNVSFRRIKVLMELAN+H+A++ LS+KM IFG  +  
Sbjct: 432 CDMGKLVEAEKCFLQMVEKGHKPSNVSFRRIKVLMELANKHDAIRNLSEKMAIFGSSIRA 491

Query: 363 HDRI-EREAS*P 395
            + + E+E S P
Sbjct: 492 PEGMDEKECSDP 503


>ref|XP_002279193.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g02420-like [Vitis vinifera]
          Length = 526

 Score =  194 bits (494), Expect = 5e-48
 Identities = 93/124 (75%), Positives = 106/124 (85%)
 Frame = +3

Query: 6   LYKRMMDAGCLPNTQSCMFLIRLFKKQEKVQMALVLWKDMVEKGFGSYILVSDVLFDLLC 185
           LY+RM   GCLPNTQSCMFL RLF++QEKV+MAL LW DMVEKGFGSYILVSDVLFD+LC
Sbjct: 390 LYQRMKKTGCLPNTQSCMFLTRLFRRQEKVEMALELWNDMVEKGFGSYILVSDVLFDMLC 449

Query: 186 DLGKLEEAENCFLQMVEKGHKPSNVSFRRIKVLMELANRHEALKILSKKMGIFGPIVLEH 365
           D+GKL E E C LQM+EKGHKPSNVSFRRIKVLMELAN+HEAL+ L++KM +FGP     
Sbjct: 450 DMGKLVEVEKCCLQMIEKGHKPSNVSFRRIKVLMELANKHEALQNLTEKMAMFGPSTQVQ 509

Query: 366 DRIE 377
           +R E
Sbjct: 510 ERAE 513


>ref|XP_003518677.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g02420-like [Glycine max]
          Length = 500

 Score =  191 bits (486), Expect = 4e-47
 Identities = 92/115 (80%), Positives = 103/115 (89%)
 Frame = +3

Query: 3   NLYKRMMDAGCLPNTQSCMFLIRLFKKQEKVQMALVLWKDMVEKGFGSYILVSDVLFDLL 182
           N+Y+RMM  GCLPNTQSCMFLIRLF++ EKV+MAL  W DMVEKGFGSY LVSDVLFDLL
Sbjct: 363 NMYQRMMVEGCLPNTQSCMFLIRLFRRHEKVEMALQFWGDMVEKGFGSYTLVSDVLFDLL 422

Query: 183 CDLGKLEEAENCFLQMVEKGHKPSNVSFRRIKVLMELANRHEALKILSKKMGIFG 347
           CD+GKLEEAE CFL+MVEKG KPS+VSFRRIKVLMELANRHEAL+ L +KM +FG
Sbjct: 423 CDMGKLEEAEKCFLEMVEKGQKPSHVSFRRIKVLMELANRHEALQSLMQKMAMFG 477


>ref|XP_003591356.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355480404|gb|AES61607.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 518

 Score =  191 bits (484), Expect = 7e-47
 Identities = 90/124 (72%), Positives = 108/124 (87%)
 Frame = +3

Query: 3   NLYKRMMDAGCLPNTQSCMFLIRLFKKQEKVQMALVLWKDMVEKGFGSYILVSDVLFDLL 182
           NLYKRMM  GCLP TQSCMFLIRLFK+ EK++MAL LW +MVEKGFGSY LVSDVLFD+L
Sbjct: 357 NLYKRMMGEGCLPYTQSCMFLIRLFKRHEKMEMALQLWGEMVEKGFGSYTLVSDVLFDML 416

Query: 183 CDLGKLEEAENCFLQMVEKGHKPSNVSFRRIKVLMELANRHEALKILSKKMGIFGPIVLE 362
           CD+GKL EAE CFL+M+EKG +PSNVSF+RIKVLMELAN+HEA++ L++KM IFG  +  
Sbjct: 417 CDMGKLMEAEKCFLEMIEKGQRPSNVSFKRIKVLMELANKHEAIQNLTQKMAIFGRPLQV 476

Query: 363 HDRI 374
           H+R+
Sbjct: 477 HERV 480