BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00034247
         (632 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAD17398.1| putative non-LTR retroelement reverse transcripta...   120   6e-30
gb|ABD64923.1| hypothetical protein 24.t00067 [Brassica oleracea]     124   3e-29
emb|CCA66054.1| hypothetical protein [Beta vulgaris subsp. vulga...   114   2e-27
emb|CCA66044.1| hypothetical protein [Beta vulgaris subsp. vulga...   113   6e-27
dbj|BAF01759.1| putative non-LTR retroelement reverse transcript...   110   7e-27

>gb|AAD17398.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
           thaliana]
          Length = 1225

 Score =  120 bits (302), Expect(2) = 6e-30
 Identities = 57/133 (42%), Positives = 86/133 (64%)
 Frame = -2

Query: 499 DQFLSPIPALIFDEDNQNLLQPVTPEEILLTLKQMGPLKSPGPDGYQAKFFLTYWDILGP 320
           D  L  +P LI +E N++L + ++PEE+   L  + P K+PGPDG  A F+  YWD+ GP
Sbjct: 353 DSALQEVPVLITEEMNKSLTKVISPEEVKRALFSLNPDKAPGPDGMTAFFYQHYWDLTGP 412

Query: 319 RVCSMVQYFFAHGTFSKVLNHLFITLVPKVSNPLKPENFRPISLANVLYKLVSKIITSRM 140
            +  +VQ F + G F + LN   I L+PK   P K   FRPISL NV YK++SK+++SR+
Sbjct: 413 DLIKLVQNFHSTGFFDERLNETNICLIPKTERPRKMAEFRPISLCNVSYKVISKVLSSRL 472

Query: 139 RSLMGKIVSPTES 101
           + L+ +++S T+S
Sbjct: 473 KRLLPELISETQS 485



 Score = 35.8 bits (81), Expect(2) = 6e-30
 Identities = 15/26 (57%), Positives = 20/26 (76%)
 Frame = -1

Query: 101 SFVPERYIHDNVLLAQEVFHKIRSKP 24
           +FV ER I DN+L+AQE FH +R+ P
Sbjct: 486 AFVAERLITDNILIAQENFHALRTNP 511


>gb|ABD64923.1| hypothetical protein 24.t00067 [Brassica oleracea]
          Length = 381

 Score =  124 bits (310), Expect(2) = 3e-29
 Identities = 60/156 (38%), Positives = 98/156 (62%)
 Frame = -2

Query: 568 EQIGLQFLNYFKTIMETTNLYMEDQFLSPIPALIFDEDNQNLLQPVTPEEILLTLKQMGP 389
           ++I  + L YF  I  ++        L  I  ++ DE N  L + VT EE+ +++  +G 
Sbjct: 185 KEISKEALRYFSEIFTSSLQGNIQDSLGNINRVVSDECNAYLSRDVTAEEVRISVFSIGA 244

Query: 388 LKSPGPDGYQAKFFLTYWDILGPRVCSMVQYFFAHGTFSKVLNHLFITLVPKVSNPLKPE 209
            ++PGPDG  A F+ TYWDI+GP V   V++FF  G F   LNH  + L+PK++NP+  +
Sbjct: 245 TRAPGPDGLTASFYQTYWDIVGPAVVEEVRHFFNTGEFYSDLNHTNLCLIPKITNPITMK 304

Query: 208 NFRPISLANVLYKLVSKIITSRMRSLMGKIVSPTES 101
           +FRPI+L NV+YK++SKI++  M+S++  ++S  +S
Sbjct: 305 DFRPIALCNVMYKIISKILSLCMKSILHFVISENQS 340



 Score = 30.4 bits (67), Expect(2) = 3e-29
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = -1

Query: 98  FVPERYIHDNVLLAQEVFHKIR 33
           F+P R+I DNV LA EV H ++
Sbjct: 342 FIPGRHITDNVFLAHEVVHSLK 363


>emb|CCA66054.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1355

 Score =  114 bits (284), Expect(2) = 2e-27
 Identities = 61/153 (39%), Positives = 91/153 (59%), Gaps = 3/153 (1%)
 Frame = -2

Query: 550 FLNYFKTIMETTN---LYMEDQFLSPIPALIFDEDNQNLLQPVTPEEILLTLKQMGPLKS 380
           F +YF +I  ++N   L +E   +S I  ++ +E N  LL+P + +EIL  L+QM P K+
Sbjct: 391 FTSYFSSIFTSSNPSDLSLE-AVMSVIEPVVTEEHNLKLLEPFSKDEILAALQQMHPCKA 449

Query: 379 PGPDGYQAKFFLTYWDILGPRVCSMVQYFFAHGTFSKVLNHLFITLVPKVSNPLKPENFR 200
           PGPDG    F+  +W I+G  V S +       +    +N+  I L+PKV NP K   FR
Sbjct: 450 PGPDGMHVIFYQRFWHIVGDDVTSFISNILHGHSSPSCVNNTNIALIPKVKNPTKAAEFR 509

Query: 199 PISLANVLYKLVSKIITSRMRSLMGKIVSPTES 101
           PI+L NVLYKL+SK I  R++S + +I+S  +S
Sbjct: 510 PIALCNVLYKLMSKAIVMRLKSFLPEIISENQS 542



 Score = 34.3 bits (77), Expect(2) = 2e-27
 Identities = 14/31 (45%), Positives = 21/31 (67%)
 Frame = -1

Query: 101 SFVPERYIHDNVLLAQEVFHKIRSKPNRKHG 9
           +FVP R I DN L+A EVFH ++++   + G
Sbjct: 543 AFVPGRLITDNALIAMEVFHSMKNRNRSRKG 573


>emb|CCA66044.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1355

 Score =  113 bits (282), Expect(2) = 6e-27
 Identities = 63/160 (39%), Positives = 93/160 (58%), Gaps = 4/160 (2%)
 Frame = -2

Query: 568 EQIGLQFLNYFKTIMETTN---LYMEDQFLSPIPALIFDEDNQNLLQPVTPEEILLTLKQ 398
           + I   F +YF +I  +TN   + + D  L  +  ++ +E N  LL+P + EE+ + L Q
Sbjct: 385 DDIECVFTDYFTSIFTSTNPSDVQLND-VLCCVDPVVTEECNTWLLKPFSKEELYVALSQ 443

Query: 397 MGPLKSPGPDGYQAKFFLTYWDILGPRVCSMVQYFFAHGTFS-KVLNHLFITLVPKVSNP 221
           M P K+PGPDG  A F+  +W I+G  V   V     HG+ S   +NH  I L+PKV NP
Sbjct: 444 MHPCKAPGPDGMHAIFYQKFWHIIGDDVTQFVSSIL-HGSISPSCINHTNIALIPKVKNP 502

Query: 220 LKPENFRPISLANVLYKLVSKIITSRMRSLMGKIVSPTES 101
             P  FRPI+L NV+YKLVSK +  R++  + ++VS  +S
Sbjct: 503 TTPAEFRPIALCNVVYKLVSKALVIRLKDFLPRLVSENQS 542



 Score = 33.5 bits (75), Expect(2) = 6e-27
 Identities = 14/31 (45%), Positives = 20/31 (64%)
 Frame = -1

Query: 101 SFVPERYIHDNVLLAQEVFHKIRSKPNRKHG 9
           +FVP R I DN L+A EVFH ++ +   + G
Sbjct: 543 AFVPGRLITDNALIAMEVFHSMKHRNRSRKG 573


>dbj|BAF01759.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
           thaliana]
          Length = 400

 Score =  110 bits (275), Expect(2) = 7e-27
 Identities = 51/118 (43%), Positives = 78/118 (66%)
 Frame = -2

Query: 454 NQNLLQPVTPEEILLTLKQMGPLKSPGPDGYQAKFFLTYWDILGPRVCSMVQYFFAHGTF 275
           N++L + ++PEE+   L  + P K+PGPDG  A F+  YWD+ GP +  +VQ F + G F
Sbjct: 2   NKSLTKVISPEEVKRALFSLNPDKAPGPDGMTAFFYQHYWDLTGPDLIKLVQNFHSTGFF 61

Query: 274 SKVLNHLFITLVPKVSNPLKPENFRPISLANVLYKLVSKIITSRMRSLMGKIVSPTES 101
            + LN   I L+PK   P K   FRPISL NV YK++SK+++SR++ L+ +++S T+S
Sbjct: 62  DERLNETNICLIPKTERPRKMAEFRPISLCNVSYKVISKVLSSRLKRLLPELISETQS 119



 Score = 35.8 bits (81), Expect(2) = 7e-27
 Identities = 15/26 (57%), Positives = 20/26 (76%)
 Frame = -1

Query: 101 SFVPERYIHDNVLLAQEVFHKIRSKP 24
           +FV ER I DN+L+AQE FH +R+ P
Sbjct: 120 AFVAERLITDNILIAQENFHALRTNP 145