BLASTX nr result
ID: Coptis21_contig00034245
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis21_contig00034245
(583 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|ABD28627.2| RNA-directed DNA polymerase (Reverse transcriptas... 122 2e-27
gb|AAF97969.1|AC000103_19 F21J9.30 [Arabidopsis thaliana] 119 2e-26
gb|AAG03119.1|AC004133_13 F5A9.24 [Arabidopsis thaliana] 119 2e-26
gb|EAZ07996.1| hypothetical protein OsI_30258 [Oryza sativa Indi... 119 3e-26
gb|EEE69144.1| hypothetical protein OsJ_28268 [Oryza sativa Japo... 119 4e-26
>gb|ABD28627.2| RNA-directed DNA polymerase (Reverse transcriptase); Ribonuclease H
[Medicago truncatula]
Length = 1296
Score = 122 bits (307), Expect(2) = 2e-27
Identities = 61/170 (35%), Positives = 97/170 (57%)
Frame = +2
Query: 74 FFHTLVKCRRDINFIHSIRDLNGGVLIERQQIGDRLLEFFQDTMTTSDPDFESHLFHVDA 253
FFH RR N IH ++ NG + + + L++F+ S +
Sbjct: 357 FFHAQTVIRRKWNKIHKLQLPNGISTSDSNILQEEALKYFKKFFCGSQIPYSRFFNEGRH 416
Query: 254 PSISEDVKLDLLQEVRTEEIVAALKQMKPFKAPGPDGYQAFFFQNFWHLLGDQVCAAVKK 433
P++ + K L + +E+ AAL MKP+KAPGPDG+ FF+ +WH++GD V V+
Sbjct: 417 PALDDTGKTSLTSPITKKEVFAALNSMKPYKAPGPDGFHCIFFKQYWHIVGDDVFHLVRS 476
Query: 434 FFLIGTFSLQLNHSFIALIPKVMNPSLPEHFRPISLRNVVYKLISKIIVN 583
FL G F ++++ IALIPK+ +P+ + FRPISL N +YK+I+K++V+
Sbjct: 477 AFLTGHFDPAISNTLIALIPKIDSPNTYKDFRPISLCNTLYKIITKVLVH 526
Score = 25.0 bits (53), Expect(2) = 2e-27
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = +1
Query: 4 QQANHWGQKACLDWFQFGDQNTKVF 78
Q+ W QK+ W + GD+NT F
Sbjct: 334 QEEMLWYQKSREQWVKLGDKNTAFF 358
>gb|AAF97969.1|AC000103_19 F21J9.30 [Arabidopsis thaliana]
Length = 1270
Score = 119 bits (299), Expect(2) = 2e-26
Identities = 63/169 (37%), Positives = 96/169 (56%)
Frame = +2
Query: 71 RFFHTLVKCRRDINFIHSIRDLNGGVLIERQQIGDRLLEFFQDTMTTSDPDFESHLFHVD 250
++FH VK R I ++D+NG + G+ +F + +S+P + F
Sbjct: 316 KYFHAAVKQNRQRKRIEKLKDVNGNMQTSEAAKGEVAAAYFGNLFKSSNPSGFTDWFSGL 375
Query: 251 APSISEDVKLDLLQEVRTEEIVAALKQMKPFKAPGPDGYQAFFFQNFWHLLGDQVCAAVK 430
P +SE + L+ EV +EI A+ +KP APGPDG A FFQ++W +G+QV + VK
Sbjct: 376 VPRVSEVMNESLVGEVSAQEIKEAVFSIKPASAPGPDGMSALFFQHYWSTVGNQVTSEVK 435
Query: 431 KFFLIGTFSLQLNHSFIALIPKVMNPSLPEHFRPISLRNVVYKLISKII 577
KFF G + N++ + LIPK +P+ RPISL +V+YK+ISKI+
Sbjct: 436 KFFADGIMPAEWNYTHLCLIPKTQHPTEMVDLRPISLCSVLYKIISKIM 484
Score = 24.6 bits (52), Expect(2) = 2e-26
Identities = 8/25 (32%), Positives = 16/25 (64%)
Frame = +1
Query: 4 QQANHWGQKACLDWFQFGDQNTKVF 78
++ +W QK+ W + G++N+K F
Sbjct: 294 EEEAYWKQKSRQKWLRSGNRNSKYF 318
>gb|AAG03119.1|AC004133_13 F5A9.24 [Arabidopsis thaliana]
Length = 1254
Score = 119 bits (299), Expect(2) = 2e-26
Identities = 63/169 (37%), Positives = 96/169 (56%)
Frame = +2
Query: 71 RFFHTLVKCRRDINFIHSIRDLNGGVLIERQQIGDRLLEFFQDTMTTSDPDFESHLFHVD 250
++FH VK R I ++D+NG + G+ +F + +S+P + F
Sbjct: 319 KYFHAAVKQNRQRKRIEKLKDVNGNMQTSEAAKGEVAAAYFGNLFKSSNPSGFTDWFSGL 378
Query: 251 APSISEDVKLDLLQEVRTEEIVAALKQMKPFKAPGPDGYQAFFFQNFWHLLGDQVCAAVK 430
P +SE + L+ EV +EI A+ +KP APGPDG A FFQ++W +G+QV + VK
Sbjct: 379 VPRVSEVMNESLVGEVSAQEIKEAVFSIKPASAPGPDGMSALFFQHYWSTVGNQVTSEVK 438
Query: 431 KFFLIGTFSLQLNHSFIALIPKVMNPSLPEHFRPISLRNVVYKLISKII 577
KFF G + N++ + LIPK +P+ RPISL +V+YK+ISKI+
Sbjct: 439 KFFADGIMPAEWNYTHLCLIPKTQHPTEMVDLRPISLCSVLYKIISKIM 487
Score = 24.6 bits (52), Expect(2) = 2e-26
Identities = 8/25 (32%), Positives = 16/25 (64%)
Frame = +1
Query: 4 QQANHWGQKACLDWFQFGDQNTKVF 78
++ +W QK+ W + G++N+K F
Sbjct: 297 EEEAYWKQKSRQKWLRSGNRNSKYF 321
>gb|EAZ07996.1| hypothetical protein OsI_30258 [Oryza sativa Indica Group]
Length = 633
Score = 119 bits (298), Expect(2) = 3e-26
Identities = 68/172 (39%), Positives = 99/172 (57%), Gaps = 1/172 (0%)
Frame = +2
Query: 71 RFFHTLVKCRRDINFIHSIRDLNGGVLIERQQIGDRLLEFFQDTMTTSDPDFE-SHLFHV 247
RFFH+ R N I +RD +G V +++ E+FQ + T+DP + S + +
Sbjct: 432 RFFHSKAVWRAKKNKITKLRDSDGTVHSTTKELESMATEYFQ-RLFTADPSIDHSRVTSL 490
Query: 248 DAPSISEDVKLDLLQEVRTEEIVAALKQMKPFKAPGPDGYQAFFFQNFWHLLGDQVCAAV 427
P +++ + +L + V EEI AL Q+ P KAPGPDG+ F+Q W +L D + AV
Sbjct: 491 IKPKVTDAMNEELCKTVSEEEIANALFQIGPLKAPGPDGFPGRFYQRNWAILKDDIVRAV 550
Query: 428 KKFFLIGTFSLQLNHSFIALIPKVMNPSLPEHFRPISLRNVVYKLISKIIVN 583
++FF GT +N + I LIPK P + FRPISL NVVYK++SK +VN
Sbjct: 551 QEFFSSGTMPSGVNETAIVLIPKTEQPQELKDFRPISLCNVVYKIVSKCLVN 602
Score = 24.6 bits (52), Expect(2) = 3e-26
Identities = 8/20 (40%), Positives = 14/20 (70%)
Frame = +1
Query: 19 WGQKACLDWFQFGDQNTKVF 78
W Q++ + W + GD+NT+ F
Sbjct: 415 WLQRSRIAWLKEGDRNTRFF 434
>gb|EEE69144.1| hypothetical protein OsJ_28268 [Oryza sativa Japonica Group]
Length = 1256
Score = 119 bits (297), Expect(2) = 4e-26
Identities = 68/172 (39%), Positives = 99/172 (57%), Gaps = 1/172 (0%)
Frame = +2
Query: 71 RFFHTLVKCRRDINFIHSIRDLNGGVLIERQQIGDRLLEFFQDTMTTSDPDFE-SHLFHV 247
RFFH+ R N I +RD +G V +++ E+FQ + T+DP + S + +
Sbjct: 432 RFFHSKAVWRAKKNKITKLRDSDGTVHNTTKELESMATEYFQ-RLFTADPSIDHSRVTSL 490
Query: 248 DAPSISEDVKLDLLQEVRTEEIVAALKQMKPFKAPGPDGYQAFFFQNFWHLLGDQVCAAV 427
P +++ + +L + V EEI AL Q+ P KAPGPDG+ F+Q W +L D + AV
Sbjct: 491 IKPKVTDAMNEELCKTVSEEEIANALFQIGPLKAPGPDGFPGRFYQRNWAILKDDIVRAV 550
Query: 428 KKFFLIGTFSLQLNHSFIALIPKVMNPSLPEHFRPISLRNVVYKLISKIIVN 583
++FF GT +N + I LIPK P + FRPISL NVVYK++SK +VN
Sbjct: 551 QEFFSSGTMPSGVNETAIVLIPKTEQPQELKDFRPISLCNVVYKIVSKCLVN 602
Score = 24.6 bits (52), Expect(2) = 4e-26
Identities = 8/20 (40%), Positives = 14/20 (70%)
Frame = +1
Query: 19 WGQKACLDWFQFGDQNTKVF 78
W Q++ + W + GD+NT+ F
Sbjct: 415 WLQRSRIAWLKEGDRNTRFF 434