BLASTX nr result

ID: Coptis21_contig00034231 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00034231
         (354 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI39152.3| unnamed protein product [Vitis vinifera]               80   1e-13
ref|XP_002267730.1| PREDICTED: mitochondrial import inner membra...    80   1e-13
ref|XP_002321119.1| predicted protein [Populus trichocarpa] gi|2...    80   2e-13
ref|XP_002531603.1| mitochondria associated granulocyte macropha...    78   7e-13
dbj|BAB10087.1| unnamed protein product [Arabidopsis thaliana]         74   1e-11

>emb|CBI39152.3| unnamed protein product [Vitis vinifera]
          Length = 253

 Score = 80.5 bits (197), Expect = 1e-13
 Identities = 40/52 (76%), Positives = 45/52 (86%), Gaps = 1/52 (1%)
 Frame = -3

Query: 352 ILGVTENSSWEEILQKYNTLFERNA-NGSFYLQSKIQKAKEYLEAANQGKGQ 200
           ILGVTE S+WEEILQKY+TLFERNA NGSFYLQSK+ +AKE LEA +QG  Q
Sbjct: 198 ILGVTEQSTWEEILQKYDTLFERNAKNGSFYLQSKVHRAKECLEAVHQGNSQ 249


>ref|XP_002267730.1| PREDICTED: mitochondrial import inner membrane translocase subunit
           tim16-like [Vitis vinifera]
          Length = 120

 Score = 80.5 bits (197), Expect = 1e-13
 Identities = 40/52 (76%), Positives = 45/52 (86%), Gaps = 1/52 (1%)
 Frame = -3

Query: 352 ILGVTENSSWEEILQKYNTLFERNA-NGSFYLQSKIQKAKEYLEAANQGKGQ 200
           ILGVTE S+WEEILQKY+TLFERNA NGSFYLQSK+ +AKE LEA +QG  Q
Sbjct: 65  ILGVTEQSTWEEILQKYDTLFERNAKNGSFYLQSKVHRAKECLEAVHQGNSQ 116


>ref|XP_002321119.1| predicted protein [Populus trichocarpa] gi|222861892|gb|EEE99434.1|
           predicted protein [Populus trichocarpa]
          Length = 116

 Score = 80.1 bits (196), Expect = 2e-13
 Identities = 38/52 (73%), Positives = 47/52 (90%), Gaps = 1/52 (1%)
 Frame = -3

Query: 352 ILGVTENSSWEEILQKYNTLFERNA-NGSFYLQSKIQKAKEYLEAANQGKGQ 200
           ILGVTE +SWEEIL+KY+TLFERN+ NGSFY+QSK+ +AKE LEA +QGKG+
Sbjct: 61  ILGVTEETSWEEILKKYDTLFERNSKNGSFYIQSKVHRAKECLEAVHQGKGE 112


>ref|XP_002531603.1| mitochondria associated granulocyte macrophage csf signaling
           molecule, putative [Ricinus communis]
           gi|223528770|gb|EEF30778.1| mitochondria associated
           granulocyte macrophage csf signaling molecule, putative
           [Ricinus communis]
          Length = 190

 Score = 78.2 bits (191), Expect = 7e-13
 Identities = 38/52 (73%), Positives = 45/52 (86%), Gaps = 1/52 (1%)
 Frame = -3

Query: 352 ILGVTENSSWEEILQKYNTLFERNA-NGSFYLQSKIQKAKEYLEAANQGKGQ 200
           ILGVT+ ++WEEIL KY TLFERNA NGSFYLQSK+ +AKE LEA +QGKG+
Sbjct: 76  ILGVTKETAWEEILNKYETLFERNAKNGSFYLQSKVHRAKECLEALHQGKGE 127


>dbj|BAB10087.1| unnamed protein product [Arabidopsis thaliana]
          Length = 102

 Score = 73.9 bits (180), Expect = 1e-11
 Identities = 41/59 (69%), Positives = 46/59 (77%), Gaps = 1/59 (1%)
 Frame = -3

Query: 352 ILGVTENSSWEEILQKYNTLFERNA-NGSFYLQSKIQKAKEYLEAANQGKGQ*KSVRTS 179
           ILGVTE SSW+EIL+KY+TLFERNA NGSFYLQSK+ +AKE LE A Q     KS  TS
Sbjct: 48  ILGVTEKSSWDEILKKYDTLFERNAQNGSFYLQSKVHRAKECLETAYQ-----KSTTTS 101


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