BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00034189
         (284 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAP43914.1| integrase [Gossypium raimondii]                         68   4e-20
gb|AAF79348.1|AC007887_7 F15O4.13 [Arabidopsis thaliana]               72   1e-19
gb|AAW28578.1| Putative gag-pol polyprotein, identical [Solanum ...    78   2e-19
gb|AAW28577.1| Putative gag-pol polyprotein, identical [Solanum ...    78   2e-19
emb|CAN80356.1| hypothetical protein VITISV_003506 [Vitis vinifera]    74   1e-18

>gb|AAP43914.1| integrase [Gossypium raimondii]
          Length = 340

 Score = 68.2 bits (165), Expect(2) = 4e-20
 Identities = 26/48 (54%), Positives = 37/48 (77%)
 Frame = -3

Query: 162 FKHNQLCVPDCSLREAIIMEAHGGGLAGHFGRDKTLAIVAENFYWPKL 19
           F++N+LC+P CS+RE ++ EAH GGL GHFG  KT  ++ E+FYWP +
Sbjct: 150 FQNNRLCLPKCSMRELLVREAHSGGLMGHFGVTKTYDVLHEHFYWPNM 197



 Score = 54.7 bits (130), Expect(2) = 4e-20
 Identities = 21/42 (50%), Positives = 32/42 (76%)
 Frame = -2

Query: 283 KVLGFELIKELYKDDSYFSTIWEECTKGPHHQYFSHDGFLFQ 158
           K+LGFE +K+LY  DS F++I++ C  G  H+++ HDG+LFQ
Sbjct: 110 KLLGFEYLKDLYATDSDFASIYDACEHGAFHKFYKHDGYLFQ 151


>gb|AAF79348.1|AC007887_7 F15O4.13 [Arabidopsis thaliana]
          Length = 1887

 Score = 72.4 bits (176), Expect(2) = 1e-19
 Identities = 31/61 (50%), Positives = 42/61 (68%)
 Frame = -3

Query: 183  FRMMASFFKHNQLCVPDCSLREAIIMEAHGGGLAGHFGRDKTLAIVAENFYWPKLVRDVT 4
            +R     F  N+LC+P+ SLRE  I EAHGGGL GHFG  KT+ ++ ++F+WP + RDV 
Sbjct: 1364 YRHDGFLFYDNRLCIPNSSLRELFIREAHGGGLMGHFGVSKTIKVMQDHFHWPHMKRDVE 1423

Query: 3    R 1
            R
Sbjct: 1424 R 1424



 Score = 48.5 bits (114), Expect(2) = 1e-19
 Identities = 22/41 (53%), Positives = 27/41 (65%)
 Frame = -2

Query: 283  KVLGFELIKELYKDDSYFSTIWEECTKGPHHQYFSHDGFLF 161
            K+LGFE IK LY +DS F  I+  C K    +Y+ HDGFLF
Sbjct: 1331 KLLGFEHIKSLYANDSDFEKIYSSCEKFAFGKYYRHDGFLF 1371


>gb|AAW28578.1| Putative gag-pol polyprotein, identical [Solanum demissum]
          Length = 1588

 Score = 77.8 bits (190), Expect(2) = 2e-19
 Identities = 33/54 (61%), Positives = 42/54 (77%)
 Frame = -3

Query: 162  FKHNQLCVPDCSLREAIIMEAHGGGLAGHFGRDKTLAIVAENFYWPKLVRDVTR 1
            FK N+LCVP+CSLRE  + EAH GGL GHFG  KTL I++E+FYWP + +DV +
Sbjct: 1133 FKENKLCVPNCSLRELFVREAHCGGLMGHFGVPKTLEILSEHFYWPSMRKDVEK 1186



 Score = 42.4 bits (98), Expect(2) = 2e-19
 Identities = 20/42 (47%), Positives = 27/42 (64%)
 Frame = -2

Query: 283  KVLGFELIKELYKDDSYFSTIWEECTKGPHHQYFSHDGFLFQ 158
            K+LGF+ IK LY +DS F  I+ EC  GP  ++   D FLF+
Sbjct: 1093 KLLGFDQIKFLYANDSDFGEIFAECKLGPFEKFNLQDEFLFK 1134


>gb|AAW28577.1| Putative gag-pol polyprotein, identical [Solanum demissum]
          Length = 1588

 Score = 77.8 bits (190), Expect(2) = 2e-19
 Identities = 33/54 (61%), Positives = 42/54 (77%)
 Frame = -3

Query: 162  FKHNQLCVPDCSLREAIIMEAHGGGLAGHFGRDKTLAIVAENFYWPKLVRDVTR 1
            FK N+LCVP+CSLRE  + EAH GGL GHFG  KTL I++E+FYWP + +DV +
Sbjct: 1133 FKENKLCVPNCSLRELFVREAHCGGLMGHFGVPKTLEILSEHFYWPSMRKDVEK 1186



 Score = 42.4 bits (98), Expect(2) = 2e-19
 Identities = 20/42 (47%), Positives = 27/42 (64%)
 Frame = -2

Query: 283  KVLGFELIKELYKDDSYFSTIWEECTKGPHHQYFSHDGFLFQ 158
            K+LGF+ IK LY +DS F  I+ EC  GP  ++   D FLF+
Sbjct: 1093 KLLGFDQIKFLYANDSDFGEIFAECKLGPFEKFNLQDEFLFK 1134


>emb|CAN80356.1| hypothetical protein VITISV_003506 [Vitis vinifera]
          Length = 960

 Score = 74.3 bits (181), Expect(2) = 1e-18
 Identities = 31/61 (50%), Positives = 45/61 (73%)
 Frame = -3

Query: 183 FRMMASFFKHNQLCVPDCSLREAIIMEAHGGGLAGHFGRDKTLAIVAENFYWPKLVRDVT 4
           +R+    F+ N+LCVP+ S+ E ++ EAHGGGL GHFG  +TL ++ E+F+WPK+ RDV 
Sbjct: 626 YRLDGYLFRENRLCVPNSSMCELLVHEAHGGGLMGHFGVRRTLDVLYEHFFWPKMKRDVE 685

Query: 3   R 1
           R
Sbjct: 686 R 686



 Score = 43.5 bits (101), Expect(2) = 1e-18
 Identities = 17/42 (40%), Positives = 30/42 (71%)
 Frame = -2

Query: 283 KVLGFELIKELYKDDSYFSTIWEECTKGPHHQYFSHDGFLFQ 158
           K+LGFE +KELY +D+ F++++  C K    +++  DG+LF+
Sbjct: 593 KLLGFEYVKELYANDNDFASLYGACEKAAFGKFYRLDGYLFR 634