BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00034165
         (989 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002277549.1| PREDICTED: pentatricopeptide repeat-containi...   217   4e-54
ref|XP_002528283.1| pentatricopeptide repeat-containing protein,...   201   3e-49
ref|XP_004172296.1| PREDICTED: pentatricopeptide repeat-containi...   189   7e-46
ref|XP_004137053.1| PREDICTED: pentatricopeptide repeat-containi...   188   2e-45
ref|XP_002880355.1| pentatricopeptide repeat-containing protein ...   171   2e-40

>ref|XP_002277549.1| PREDICTED: pentatricopeptide repeat-containing protein At2g21090
           [Vitis vinifera]
          Length = 612

 Score =  217 bits (552), Expect = 4e-54
 Identities = 103/147 (70%), Positives = 123/147 (83%)
 Frame = -3

Query: 987 ITADQEHYACLVDLFGRAGRFDEVKDLLQKMSCKPDGRVWNAVLGACKIHGNTELGRIAA 808
           I   QEHYACL+DL GRAG F+EV D L+KM  KPD RVWNA+LG C+IHG+ ELGR AA
Sbjct: 458 IVPSQEHYACLIDLLGRAGCFEEVMDQLEKMPYKPDDRVWNALLGVCRIHGHIELGRKAA 517

Query: 807 EHLIDLEPQSSAAYVLLSNIYALSGRWKSVEKVRHLMNRRQVKKEQAISWVEVESKVHSF 628
           E LI+LEPQSS AYVLLS+IYA+ GRW+SV+KVR LMN RQVKKE+AISW+E+E+KVHSF
Sbjct: 518 ERLIELEPQSSTAYVLLSSIYAVLGRWESVQKVRQLMNERQVKKERAISWLEIENKVHSF 577

Query: 627 TVFDQLHPLKDEIYLALEQLTGQMDDD 547
           +V D  HPLK++IY  LEQL GQM++D
Sbjct: 578 SVSDSSHPLKEQIYSVLEQLAGQMEED 604


>ref|XP_002528283.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223532320|gb|EEF34121.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 602

 Score =  201 bits (510), Expect = 3e-49
 Identities = 90/146 (61%), Positives = 118/146 (80%)
 Frame = -3

Query: 987 ITADQEHYACLVDLFGRAGRFDEVKDLLQKMSCKPDGRVWNAVLGACKIHGNTELGRIAA 808
           +  +QEHYACL+DL GRAG FD + + L+KM CKP+  +WNA+LG C++HGN E GR  A
Sbjct: 449 VIPNQEHYACLIDLLGRAGHFDTLMNQLEKMPCKPNDEIWNALLGVCRMHGNIEFGREVA 508

Query: 807 EHLIDLEPQSSAAYVLLSNIYALSGRWKSVEKVRHLMNRRQVKKEQAISWVEVESKVHSF 628
           E +I+L+PQSSAAYVLLS+I+A  GRW+ VE VR LMN R V+K++AISW+E+E+KVHSF
Sbjct: 509 EKIIELDPQSSAAYVLLSSIHAAVGRWELVENVRQLMNERHVRKDRAISWIEIENKVHSF 568

Query: 627 TVFDQLHPLKDEIYLALEQLTGQMDD 550
           T  D+LHPLK+ IYLAL+QL G M++
Sbjct: 569 TASDRLHPLKEVIYLALKQLAGHMEE 594


>ref|XP_004172296.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g21090-like [Cucumis sativus]
          Length = 611

 Score =  189 bits (481), Expect = 7e-46
 Identities = 87/144 (60%), Positives = 114/144 (79%)
 Frame = -3

Query: 978 DQEHYACLVDLFGRAGRFDEVKDLLQKMSCKPDGRVWNAVLGACKIHGNTELGRIAAEHL 799
           DQEHYACL+DL GRAG F E+ + L+ MSCKPD RVW+A+LG C+IH N ELGR  AE +
Sbjct: 464 DQEHYACLIDLLGRAGCFVELVNELENMSCKPDDRVWSALLGVCRIHNNIELGRKVAERV 523

Query: 798 IDLEPQSSAAYVLLSNIYALSGRWKSVEKVRHLMNRRQVKKEQAISWVEVESKVHSFTVF 619
           I+L+PQSSAAYV L+++YA  G+W+SVEKVR LM+ + ++KE+ ISW++V +K HSF   
Sbjct: 524 IELKPQSSAAYVSLASLYAFLGKWESVEKVRELMDEKFIRKERGISWIDVGNKTHSFIAS 583

Query: 618 DQLHPLKDEIYLALEQLTGQMDDD 547
           D+LHPLK+EIYL LEQL    ++D
Sbjct: 584 DRLHPLKEEIYLLLEQLARHTEED 607


>ref|XP_004137053.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g21090-like [Cucumis sativus]
          Length = 611

 Score =  188 bits (478), Expect = 2e-45
 Identities = 86/144 (59%), Positives = 114/144 (79%)
 Frame = -3

Query: 978 DQEHYACLVDLFGRAGRFDEVKDLLQKMSCKPDGRVWNAVLGACKIHGNTELGRIAAEHL 799
           DQEHY+CL+DL GRAG F E+ + L+ MSCKPD RVW+A+LG C+IH N ELGR  AE +
Sbjct: 464 DQEHYSCLIDLLGRAGCFVELVNELENMSCKPDDRVWSALLGVCRIHNNIELGRKVAERV 523

Query: 798 IDLEPQSSAAYVLLSNIYALSGRWKSVEKVRHLMNRRQVKKEQAISWVEVESKVHSFTVF 619
           I+L+PQSSAAYV L+++YA  G+W+SVEKVR LM+ + ++KE+ ISW++V +K HSF   
Sbjct: 524 IELKPQSSAAYVSLASLYAFLGKWESVEKVRELMDEKFIRKERGISWIDVGNKTHSFIAS 583

Query: 618 DQLHPLKDEIYLALEQLTGQMDDD 547
           D+LHPLK+EIYL LEQL    ++D
Sbjct: 584 DRLHPLKEEIYLLLEQLARHTEED 607


>ref|XP_002880355.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata] gi|297326194|gb|EFH56614.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 599

 Score =  171 bits (434), Expect = 2e-40
 Identities = 80/151 (52%), Positives = 110/151 (72%), Gaps = 4/151 (2%)
 Frame = -3

Query: 987 ITADQEHYACLVDLFGRAGRFDEVKDLLQKMSCKPDGRVWNAVLGACKIHGNTELGRIAA 808
           I  DQEHYACL+DL GRAG F E+   +++M  +PD  +WNA+LG C+IHGN ELG+ AA
Sbjct: 445 IVPDQEHYACLIDLLGRAGCFKELMSKIEEMPFEPDKHIWNAILGVCRIHGNEELGKKAA 504

Query: 807 EHLIDLEPQSSAAYVLLSNIYALSGRWKSVEKVRHLMNRRQVKKEQAISWVEVESKVHSF 628
           E LI L+P+SSA Y+LLS+IYA  G+W+ VEK+R +M +R+V KE+A+SW+E+E+KV +F
Sbjct: 505 EELIKLDPESSAPYILLSSIYADHGKWELVEKLRGIMKKRRVNKEKAVSWIEIENKVKAF 564

Query: 627 TVFD----QLHPLKDEIYLALEQLTGQMDDD 547
           TV D      H  K+EIY  L  L   M+++
Sbjct: 565 TVSDGSHAHAHARKEEIYFILHNLAALMEEE 595