BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00034108
         (584 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002532584.1| pentatricopeptide repeat-containing protein,...   100   2e-19
ref|XP_004172369.1| PREDICTED: LOW QUALITY PROTEIN: pentatricope...    95   7e-18
ref|XP_004144802.1| PREDICTED: pentatricopeptide repeat-containi...    95   7e-18
ref|XP_002269136.1| PREDICTED: pentatricopeptide repeat-containi...    89   5e-16
emb|CAN76479.1| hypothetical protein VITISV_028175 [Vitis vinifera]    89   5e-16

>ref|XP_002532584.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223527693|gb|EEF29801.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 895

 Score =  100 bits (249), Expect = 2e-19
 Identities = 54/92 (58%), Positives = 65/92 (70%), Gaps = 3/92 (3%)
 Frame = +3

Query: 318 YDSKELALSFKDWFRTREDALLNRIFEILATTTKEEDEVSVRTSELELSQLGLRLNEMFV 497
           Y  K +  SFK+WF+T+ +  L+R+FEIL+     +DEV     EL LSQLGLRL E  V
Sbjct: 70  YTYKHVVQSFKEWFKTQNNGFLDRVFEILSN----QDEVD----ELALSQLGLRLTESLV 121

Query: 498 LRVLNYG---KDVLSCLKFFDWAGRQPGFHHT 584
           L VL+YG   KDVLSCLKFFDWAGRQ GF+HT
Sbjct: 122 LDVLHYGNSKKDVLSCLKFFDWAGRQSGFYHT 153


>ref|XP_004172369.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g71210-like, partial [Cucumis sativus]
          Length = 889

 Score = 95.1 bits (235), Expect = 7e-18
 Identities = 51/90 (56%), Positives = 66/90 (73%), Gaps = 3/90 (3%)
 Frame = +3

Query: 324 SKELALSFKDWFRTREDALLNRIFEILATTTKEEDEVSVRTS--ELELSQLGLRLNEMFV 497
           +KE+A SFK+WF++  + L  +IF+IL    +++ E+  R S  +L LS+LGLRLNE FV
Sbjct: 54  TKEVASSFKEWFKSGSNPLYGKIFQILRGA-RDDQEIPYRPSAADLALSRLGLRLNESFV 112

Query: 498 LRVLNYG-KDVLSCLKFFDWAGRQPGFHHT 584
           L VL +G KDVLSCLKFFDWAGRQ  F HT
Sbjct: 113 LDVLRFGSKDVLSCLKFFDWAGRQERFFHT 142


>ref|XP_004144802.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g71210-like [Cucumis sativus]
          Length = 913

 Score = 95.1 bits (235), Expect = 7e-18
 Identities = 51/90 (56%), Positives = 66/90 (73%), Gaps = 3/90 (3%)
 Frame = +3

Query: 324 SKELALSFKDWFRTREDALLNRIFEILATTTKEEDEVSVRTS--ELELSQLGLRLNEMFV 497
           +KE+A SFK+WF++  + L  +IF+IL    +++ E+  R S  +L LS+LGLRLNE FV
Sbjct: 78  TKEVASSFKEWFKSGSNPLYGKIFQILRGA-RDDQEIPYRPSAADLALSRLGLRLNESFV 136

Query: 498 LRVLNYG-KDVLSCLKFFDWAGRQPGFHHT 584
           L VL +G KDVLSCLKFFDWAGRQ  F HT
Sbjct: 137 LDVLRFGSKDVLSCLKFFDWAGRQERFFHT 166


>ref|XP_002269136.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g71210-like [Vitis vinifera]
          Length = 881

 Score = 89.0 bits (219), Expect = 5e-16
 Identities = 46/93 (49%), Positives = 63/93 (67%), Gaps = 1/93 (1%)
 Frame = +3

Query: 309 IDKYDSKELALSFKDWFRTREDALL-NRIFEILATTTKEEDEVSVRTSELELSQLGLRLN 485
           I    +K++ LSFK WF++ ++ LL ++IF IL+    ++ + +       L +L L L+
Sbjct: 55  IGSLQAKDVVLSFKQWFKSPQNILLMDQIFRILSDLPPDDADAA-------LGRLRLPLS 107

Query: 486 EMFVLRVLNYGKDVLSCLKFFDWAGRQPGFHHT 584
           E FVL VL +G DVLSCLKFFDWAGRQPGFHHT
Sbjct: 108 ERFVLDVLAHGSDVLSCLKFFDWAGRQPGFHHT 140


>emb|CAN76479.1| hypothetical protein VITISV_028175 [Vitis vinifera]
          Length = 1173

 Score = 89.0 bits (219), Expect = 5e-16
 Identities = 46/93 (49%), Positives = 63/93 (67%), Gaps = 1/93 (1%)
 Frame = +3

Query: 309 IDKYDSKELALSFKDWFRTREDALL-NRIFEILATTTKEEDEVSVRTSELELSQLGLRLN 485
           I    +K++ LSFK WF++ ++ LL ++IF IL+    ++ + +       L +L L L+
Sbjct: 55  IGSLQAKDVVLSFKQWFKSPQNILLMDQIFRILSDLPPDDADAA-------LGRLRLPLS 107

Query: 486 EMFVLRVLNYGKDVLSCLKFFDWAGRQPGFHHT 584
           E FVL VL +G DVLSCLKFFDWAGRQPGFHHT
Sbjct: 108 ERFVLDVLAHGSDVLSCLKFFDWAGRQPGFHHT 140